Comparative Analysis of Multiple Sequence Alignment Algorithm for the study DNA, RNA and protein nucleotides
A. metric_calculation.sh -
- Takes the input file in PIR format then convert it to FASTA format as required for alignment
- Multiple Sequence Alignment algorithm implementation to align the sequences
- Performs benchmark analysis using OXBENCH suit to give following metrics a. Strucuture Similarity score b. Column score c. Dependent accuarcy score
B.prefab_alignmet.sh
- Takes the input from prefab data and perform sequence alignment using Clustal Omega and Muscle Alogrithm
- Perform benchmark analysis using PREFAB suit to give following metrics a. quality score b. Column score c. Shift score
These files are written with consideration of my Linux server environment