rpianezza / GenomeDelta Star 7 Code Issues Pull requests Library-free horizontal transfer detection, with a focus on transposable element invasions genome fasta fastq bedtools samtools genome-analysis bwa-mem transposons genome-assembly multiple-sequence-alignment transposable-element consensus-sequences Updated Jun 14, 2024 Shell
bioinfo-ut / AluMine Star 6 Code Issues Pull requests Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes genomics k-mer alu repeatmasker transposable-element alignment-free-algorithm Updated Feb 3, 2021 Perl
drostlab / retrocombinator Star 4 Code Issues Pull requests An R/C++ package for simulating the evolution of retrotransposons over time. evolution transposition speciation transposons recombination retrotransposons transposable-element Updated Apr 1, 2022 HTML
Marcos-Fernando / AnnoTEP Star 0 Code Issues Pull requests AnnoTEP - a platform for the annotation of transposable elements in plants website bioinformatics bioinformatics-pipeline genome-annotation transposable-element bioinformatics-tool te-annotations Updated Jul 3, 2024 Perl