RADseq Data Exploration, Manipulation and Visualization using R

A tool to extract LOH blocks from VCF, BAM and FASTA data

GWAS Pre-Processing Pipeline

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.

Compare and shuffle heterozygosity using BED and VCF files

Archived code for analyses in "Genomic signatures of divergent ecological strategies in a recent radiation of Neotropical wild cats" (Ramirez et al. 2022, MBE)

A command-line parser for VCF files designed for population genetics analyses.

Bioinformatic R/Rmd-code for scientific paper published in BMC Genomics

heterPlotter package can plot heterozygosity information of hapmap(female and F1) files and pvalue information you use the same hapmap file to calculate GWAS, besides it can also draw the relative gene feature on the top of the plot