Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
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Updated
Jan 27, 2024 - Shell
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
a sequence analysis workflow for low-input nanopore sequencing
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
Common BASH routines for computational biology
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
A simple batch submission script to submit jobs to AutoDock Vina on Linux and MacOS developed by Bhavesh Ashok.
Shell script to sort .gtf files
A gallimaufry of questionable shellscripts
slurm and pbs scripts for genome, metagenome, transcriptome analysis.
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
Synchronise Nanopore reads with a server.
SLURM job temps @UAlbany
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR
Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.
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