Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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Updated
Aug 11, 2024 - Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
COBRApy is a package for constraint-based modeling of metabolic networks.
Ribbon diagrams of proteins in #golang.
Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
Python package to study microbial communities using metabolic modeling.
Computational synthetic biology: Predicting DNA edits for bioengineering
Analysis of non-covalent interactions in MD trajectories
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
Contact map analysis for biomolecules; based on MDTraj
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
A Python parser for the BRENDA database
A python package to analyse qPCR data for single-use or high-throughput application
A List of Papers on Theoretical Foundations of Graph Neural Networks
AutoML system for building trustworthy peptide bioactivity predictors
Community-curated resources for research at the intersection of AI and molecular sciences
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
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