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169 Open 192 Closed
169 Open 192 Closed
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Issues list

Kallisto occasionally freezing at BAM indexing
#177 opened Jul 19, 2018 by ulah
1
Non-ACGUT Characters
#176 opened Jun 25, 2018 by amanpatel101
2
HDF5 Output Errors
#175 opened Jun 6, 2018 by channsoden
3
pseudoalignments.bam to bed file?
#174 opened Jun 1, 2018 by dtomas1989
1
Error when running
#169 opened Apr 12, 2018 by JChristopherEllis
2
Incomplete installation instructions
#168 opened Apr 12, 2018 by mpw6
1
--genomebam does not give mapping position in bam file
#167 opened Mar 29, 2018 by sklasfeld
1
Inconsistency in kallisto pseudo matrix.ec output
#165 opened Mar 4, 2018 by leonfodoulian
2
feature request: output un-pseudoaligned reads
#163 opened Feb 28, 2018 by rschulzUK
1
Are paired and single end read files supported together?
#162 opened Feb 17, 2018 by winni2k
0.44.0 cannot use system htslib
#161 opened Feb 16, 2018 by ilovezfs
0.44.0 parallelized build failure
#160 opened Feb 16, 2018 by ilovezfs
0.44.0 cmake does not run autoreconf for htslib
#159 opened Feb 16, 2018 by ilovezfs
4
Inflated UMI counts using --umi mode
#156 opened Feb 1, 2018 by leonfodoulian
automated inference of sequencing library types
#154 opened Jan 17, 2018 by borauyar
Bootstrap results in *very* different est_counts than entire dataset
#151 opened Dec 6, 2017 by vllorens
3
broken weblink
#147 opened Oct 26, 2017 by ChrisHIV
1
got "Segmentation fault" when running "kallisto pseudo" with --umi and --pseudobam
#144 opened Sep 7, 2017 by lixin4306ren
1
Quant issue: multithreading errors
#141 opened Jul 12, 2017 by JakeGoodall
3
kallisto quant reports an error "Error: kallisto index file missing Error: file not found –i"
#140 opened Jul 7, 2017 by Stephaniedv
2
'kallisto quant --threads=60' runs on one core for hours
#128 opened Feb 16, 2017 by taltman
5
Running EM algorithm in pseudo mode
#126 opened Dec 12, 2016 by pwl
RNA-Seq gene fusion calling
#122 opened Oct 28, 2016 by schelhorn
8
build failure: include path for hdf5 is not passed from cmake to gcc
#121 opened Oct 16, 2016 by angli232
Mismatches to the Reference
#118 opened Sep 8, 2016 by DarioS
1
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