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pseudoalignments.bam to bed file? #174
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I had kind of a similar problem which was solved by using another gtf. The main problem was the gtf format. |
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Hi all,
I am using kallisto with this command:
kallisto quant -i kallisto_index --bias --genomebam --chromosomes chrm.sizes.txt --gtf ITAG3.10_gene_models.gtf -o test R2_001.tr.fq.gz R2_001.tr.fq.gz
But now I want convert my bam file from kallisto to a bed file but i have the following mistake:
bedtools bamtobed -i pseudoalignments.bam
Error:
terminate called after throwing an instance of 'std::out_of_range'
what(): vector::_M_range_check: __n (which is 18446744073709551615) >= this->size() (which is 13)
Any suggestions?, thanks in advance
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