satijalab / seurat
R toolkit for single cell genomics
See what the GitHub community is most excited about today.
R toolkit for single cell genomics
Inferring CNV from Single-Cell RNA-Seq
An implementation of the Grammar of Graphics in R
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Accurate sample inference from amplicon data with single nucleotide resolution
Interfaces for HDF5-based Single Cell File Formats
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
R package for detecting doublets in single-cell RNA sequencing data
renv: Project environments for R.
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
Dataset distribution for Seurat
Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
Make Complex Heatmaps