sequence-alignment
Here are 323 public repositories matching this topic...
A collection of python script, books, and tutorials for bioinformatics.
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Aug 23, 2024 - Python
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
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Aug 23, 2024 - JavaScript
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Aug 23, 2024 - C++
Official git repository for Biopython (originally converted from CVS)
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Aug 23, 2024 - Python
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
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Aug 22, 2024 - Python
A phylogenetics web app
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Aug 22, 2024 - TypeScript
Comparative Genomics Toolkit 3
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Aug 22, 2024 - Python
Versatile open-source tool for microbiome analysis
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Aug 21, 2024 - C++
Rust bindings to minimap2 library
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Aug 20, 2024 - Rust
Summarize SNV and indel information on single gene or genome level together with other relevant statistics based on .vcf files.
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Aug 16, 2024 - Java
SecAlignVisualizer is a tool for visualizing multiple sequence alignments with secondary structure annotations. It parses PDB files to extract helix and sheet information, maps this information to sequence alignments, and generates an HTML representation with color-coded secondary structures.
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Aug 15, 2024 - Jupyter Notebook
A versatile pairwise aligner for genomic and spliced nucleotide sequences
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Aug 15, 2024 - C
Less-wrong single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch, Smith-Waterman, and Levenshtein algorithms for sequence alignment
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Aug 14, 2024 - Python
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
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Aug 9, 2024 - Java
A python Flask Web app. The website takes multiple DNA Sequences and some parameters as input. It then aligns the sequences by MUSCLE API (multiple sequence alignment tool). It then processes the data according to the parameters given.
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Aug 9, 2024 - CSS
Sequence alignment tools
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Aug 7, 2024 - Julia
A Similarity-Guided Alignment Algorithm
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Aug 3, 2024 - Rust
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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Jul 27, 2024 - C
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