PavlidisLab / rnaseq-pipeline Star 21 Code Issues Pull requests RNA-seq pipeline for raw sequence alignment and transcript/gene quantification. bash bioinformatics rna-seq genomics ngs gene-expression bioinformatics-pipeline alignment star quantification transcriptomics illumina rsem ngs-analysis fastqc spliced-alignment stringtie splice-aware Updated Jul 3, 2024 Python
scienceforever / GLSeq Star 3 Code Issues Pull requests Pipeline for low-level RNA-Seq data processing r pipeline bacterial-transcription transcriptome transcriptomics fastq rsem rna-seq-pipeline rna-sec Updated Oct 4, 2016 R
bcgsc / rsempipeline Star 1 Code Issues Pull requests A pipeline for running rsem analysis on thousands of samples python geo ncbi sra rsem transcript-quantification Updated Feb 22, 2019 Python
nuno-agostinho / RSEM-docker Star 1 Code Issues Pull requests Docker to run RSEM for transcript quantification docker transcript quantification rsem Updated Sep 7, 2017
renatopuga / rnaseq-chr22 Star 1 Code Issues Pull requests RNAseq STAR pipeplien chr22 rnaseq star rsem colab-notebook gitpod chr22 Updated Dec 18, 2021 Jupyter Notebook
nbay13 / toilkit Star 1 Code Issues Pull requests A python package for working with inputs to and outputs from the toil-rnaseq pipeline bioinformatics rnaseq transcriptomics sequence-alignment rsem fastqc rnaseq-pipeline Updated May 10, 2024 Python
weng-lab / rnaseq-rsem-task Star 0 Code Issues Pull requests RSEM task for RNA-seq workflow docker rna-seq rna-seq-analysis rsem quantifications isoform-quantifications Updated May 25, 2020 Kotlin
renatopuga / rnaseq-callvariants Star 0 Code Issues Pull requests RNASeq and Call Variants ngs rnaseq star edger rsem call-variants gatk4 Updated Mar 2, 2021 Shell