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@GMOD

Generic Model Organism Database Project

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  1. Chado Chado Public

    the GMOD database schema

    PLpgSQL 35 25

  2. jbrowse-components jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    TypeScript 200 60

  3. jbrowse jbrowse Public

    JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

    JavaScript 460 199

  4. Apollo Apollo Public

    Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 126 85

Repositories

Showing 10 of 98 repositories
  • Apollo3 Public

    JBrowse 2 plugin for editing annotations on an Apollo server

    GMOD/Apollo3’s past year of commit activity
    TypeScript 7 Apache-2.0 4 68 9 Updated Aug 16, 2024
  • jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    GMOD/jbrowse-components’s past year of commit activity
    TypeScript 200 Apache-2.0 60 317 (6 issues need help) 21 Updated Aug 16, 2024
  • react-msaview Public

    A multiple sequence alignment viewer

    GMOD/react-msaview’s past year of commit activity
    TypeScript 16 MIT 1 22 0 Updated Aug 14, 2024
  • jbrowse-react-linear-genome-view-vanillajs-demo Public
    GMOD/jbrowse-react-linear-genome-view-vanillajs-demo’s past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 13, 2024
  • bam-js Public

    Parse BAM and BAM index files in javascript for node and the browser

    GMOD/bam-js’s past year of commit activity
    TypeScript 19 MIT 9 11 2 Updated Aug 13, 2024
  • tabix-js Public

    Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

    GMOD/tabix-js’s past year of commit activity
    TypeScript 14 MIT 5 3 2 Updated Aug 10, 2024
  • cram-js Public

    Read CRAM v3 and v2 in node or in the browser

    GMOD/cram-js’s past year of commit activity
    TypeScript 18 MIT 9 4 3 Updated Aug 9, 2024
  • jbrowse-plugin-msaview Public

    multiple sequence alignment browser plugin for JBrowse 2

    GMOD/jbrowse-plugin-msaview’s past year of commit activity
    TypeScript 4 Apache-2.0 0 4 0 Updated Aug 9, 2024
  • twobit-js Public

    Read .2bit files with pure JS. Works in node or webpack.

    GMOD/twobit-js’s past year of commit activity
    TypeScript 4 MIT 2 0 0 Updated Aug 9, 2024
  • bbi-js Public

    Parser for bigwig and bigbed files

    GMOD/bbi-js’s past year of commit activity
    TypeScript 8 MIT 6 8 0 Updated Aug 9, 2024
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