Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Toolbox for comparative genomics

Common BASH routines for computational biology

A gallimaufry of questionable shellscripts

A simple batch submission script to submit jobs to AutoDock Vina on Linux and MacOS developed by Bhavesh Ashok.

a sequence analysis workflow for low-input nanopore sequencing

Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder

Extracts information from GFF and prepare them in bed format

script to perform amplicon sequencing analysis for Norovirus genotypes and variants

Adjustments to bschiffthaler/ngs docker

Synchronise Nanopore reads with a server.

Bioinformatics projects and linux scripts.

Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.

Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore

CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.

A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for streamlined quality control and sequence data analysis.

Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.

A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.