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Issues: sqjin/CellChat

441 Open 286 Closed
441 Open 286 Closed
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Issues list

How to interpret the outgoing signaling patterns comparison Heatmap?
#653 opened Jul 28, 2023 by nandini0910
1
using cellchat with Xenium data
#652 opened Jul 26, 2023 by GhobrialMoheb
3
multiple cellchat merge and compare
#651 opened Jul 26, 2023 by zhangshuyue1
4
netVisual_aggregate
#650 opened Jul 25, 2023 by wang0430
Results were not concordance among analysis with the same dataset and the same codes
#649 opened Jul 25, 2023 by bettycatherine
Bug in setIdent() ?
#648 opened Jul 21, 2023 by stefanerb89
1
One Direction Chord Plot Showing Extra Ligand/Receptor Pairs
#647 opened Jul 20, 2023 by almm2020
Visualizing select few clusters only
#646 opened Jul 19, 2023 by Jeff87075
netClustering Error: No such strategy for futures: ‘multiprocess’
#645 opened Jul 6, 2023 by tingxie2020
1
Cannot plot netVisual_aggregate or _individual as a circular plot if the interaction only exists between certain clusters, and not all
#644 opened Jul 5, 2023 by yana123668
Clarification on CellChat Analysis Results - Definition of "sample specific" and "Incoming & Outcoming specific"
#643 opened Jun 30, 2023 by wbszhu
2
Definition of interaction strength
#641 opened Jun 23, 2023 by wk-chan
1
How the pathway information of receptor ligand pairs is obtained?
#640 opened Jun 21, 2023 by qijt123
1
missing x-label for netVisual_bubble
#639 opened Jun 19, 2023 by lwlive
unable to start device 'png' in save the plots of the all inferred network
#638 opened Jun 16, 2023 by DelongZHOU
2
function netAnalysis_signalingRole_scatter, difference between signaling = NULL and signaling = all pathways as input?
#637 opened Jun 14, 2023 by trnguyenuka
1
Difference in number of interaction when done in other way
#635 opened Jun 12, 2023 by zara03
Error in computeCommunProb(cellchat, type = "truncatedMean", trim = 0.1, : The suggested minimum value of scaled distances is in [1,2], and the calculated value here is 0
#633 opened Jun 12, 2023 by Ryeeeeeeeeee
color change for cell types in Cellchat how to add color palletteas function in here directly
#631 opened Jun 8, 2023 by zara03
Differences in results when comparing two datasets
#630 opened Jun 8, 2023 by ghost
4
Biological replicates in Seurat
#629 opened Jun 8, 2023 by ParGol544
4
Permutation test
#628 opened Jun 5, 2023 by descmo
Another question about the netVisual_bubble function
#627 opened Jun 5, 2023 by wanglu2014
Comparison of 2 datasets issue
#626 opened Jun 2, 2023 by zara03
3
Using Seurat object with genes regressed
#624 opened May 30, 2023 by pagarwal14
1
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