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Issues list

Incompatible indices error message seems to refer to incorrect version numbers
#400 opened Sep 25, 2023 by jdreyf updated Sep 25, 2023
3
pseudoaln.bin and tmp.x.bam output files.
#282 opened Sep 20, 2020 by amv33576 updated Sep 13, 2023
3
Kallisto not able to find the index file or abundance.tsv
#397 opened Sep 9, 2023 by swinnier updated Sep 11, 2023
3
does kallisto require unsorted reads?
#396 opened Sep 5, 2023 by anoronh4 updated Sep 8, 2023
6
Documentation out of date
#392 opened Aug 14, 2023 by mfansler updated Aug 14, 2023
3
Feature request: Add support for xz and zstd
#383 opened Jun 21, 2023 by outpaddling updated Jun 21, 2023
Can't Bootstrap even after attempts to compile with cmake
#382 opened Jun 1, 2023 by sikayler updated Jun 2, 2023
7
Kallisto takes a lot of time for some small size libraries
#293 opened Jan 19, 2021 by smoretti updated Apr 14, 2023
1
Are some cDNAs omitted from the kallisto index?
#324 opened Sep 24, 2021 by jamesboot updated Mar 16, 2023
12
Why is there a big difference between kallisto and cellranger count result？
#376 opened Feb 17, 2023 by aizhimin updated Mar 14, 2023
1
Is it possible to create a pseudobam file with kallistobustools (kb)?
#375 opened Jan 24, 2023 by ahmadalajami updated Feb 9, 2023
5
kallisto bus on SMART-seq3 data
#297 opened Feb 24, 2021 by winni2k updated Jan 24, 2023
8
No bus file created when no reads are pseudoaligned
#374 opened Jan 16, 2023 by pmelsted updated Jan 16, 2023
@pmelsted
std::bad_alloc error on Kallisto index
#283 opened Oct 5, 2020 by AntonioGPS updated Dec 29, 2022
7
Request: documentation of required gtf format for kallisto quant --genomebam option
#368 opened Dec 9, 2022 by SolKatzman updated Dec 28, 2022
5
genomebam produces erroneous output for minus strand exons depending on order in gtf file
#372 opened Dec 26, 2022 by SolKatzman updated Dec 26, 2022
genomebam processing does not check for missing transcript_id
#371 opened Dec 26, 2022 by SolKatzman updated Dec 26, 2022
genomebam header does not contain sort_order value SO nor command_line CL
#370 opened Dec 26, 2022 by SolKatzman updated Dec 26, 2022
Request: clarification of interaction between quant options --pseudobam and --genomebam
#367 opened Dec 9, 2022 by SolKatzman updated Dec 9, 2022
1
Request: release notes beyond v0.46.1
#366 opened Dec 9, 2022 by SolKatzman updated Dec 9, 2022
1
libc++abi: terminating with uncaught exception of type std::length_error: vector/ using loompy to make loom file from fastq
#365 opened Nov 30, 2022 by chousiniyade updated Dec 4, 2022
2
h5 file not present in output
#362 opened Nov 10, 2022 by VetAshish updated Nov 12, 2022
2
Can kallisto run on a personal laptop?
#360 opened Oct 24, 2022 by iamgiddyaboutgit updated Nov 10, 2022
3
Aligning 10x 5' data with kallisto
#361 opened Oct 31, 2022 by tabdelaal updated Oct 31, 2022
droplet RNAseq data analysis using Kallisto Bustools
#357 opened Sep 8, 2022 by satyam-espci updated Sep 9, 2022
1
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