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Why is there a big difference between kallisto and cellranger count result？ #376

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aizhimin opened this issue Feb 17, 2023 · 1 comment

aizhimin commented Feb 17, 2023

Why is there a big difference between kallisto and cellranger count result？

sample：
https://www.ncbi.nlm.nih.gov/sra/SRR8315735

kallisto:

cellranger:

Collaborator

Yenaled commented Mar 14, 2023

Can't really tell unless I see the commands used and how the index was generated.

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