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Add Fast kmerf #369

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merged 13 commits into from
May 24, 2023
Merged

Add Fast kmerf #369

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dae3d50
make kmerf fast
sampan501 May 14, 2023
1feb62e
use kernel on y as well
sampan501 May 15, 2023
52de382
update kmerf kernel
sampan501 May 15, 2023
12d6896
remove weird import
sampan501 May 16, 2023
c85906e
fix k-sample-transform rf
sampan501 May 16, 2023
6ace768
make error trace better
sampan501 May 16, 2023
58ffdfa
fix ksample rf k-sample-transform
sampan501 May 16, 2023
1c5a4f8
cast v to int for k-sample
sampan501 May 16, 2023
155c2dc
fix kmerf p-values
sampan501 May 16, 2023
786cbd3
update kmerf k-sample
sampan501 May 16, 2023
65229d2
fix kmerf unit tests
sampan501 May 17, 2023
8a343c3
fix build errors
sampan501 May 17, 2023
6f95ab7
remove is_ksamp after saving the values
sampan501 May 17, 2023
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fix build errors
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@sampan501
sampan501 committed May 17, 2023
commit 8a343c39a45b056e350d3f5984671274ab27abdb
4 changes: 2 additions & 2 deletions hyppo/ksample/ksamp.py
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Original file line number Diff line number Diff line change
Expand Up @@ -184,7 +184,7 @@ def __init__(self, indep_test, compute_distkern="euclidean", bias=False, **kwarg
"hsic": {"bias": bias, "compute_kernel": compute_distkern},
"hhg": {"compute_distance": compute_distkern},
"mgc": {"compute_distance": compute_distkern},
"kmerf": {"forest": "classifier"},
"kmerf": {"forest": "classifier", "is_ksamp": k_sample_transform},
"rv": {},
"cca": {},
}
Expand Down Expand Up @@ -299,7 +299,7 @@ def test(self, *args, reps=1000, workers=1, auto=True, random_state=None):
if self.indep_test_name in ["dcorr", "hsic"]:
kwargs = {"auto": auto}
elif self.indep_test_name in ["kmerf"]:
kwargs = {"auto": auto, "is_ksamp": k_sample_transform}
kwargs = {"auto": auto}

return self.indep_test.test(
u, v, reps, workers, **kwargs, random_state=random_state
Expand Down