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Add Fast kmerf #369

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merged 13 commits into from
May 24, 2023
Merged

Add Fast kmerf #369

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dae3d50
make kmerf fast
sampan501 May 14, 2023
1feb62e
use kernel on y as well
sampan501 May 15, 2023
52de382
update kmerf kernel
sampan501 May 15, 2023
12d6896
remove weird import
sampan501 May 16, 2023
c85906e
fix k-sample-transform rf
sampan501 May 16, 2023
6ace768
make error trace better
sampan501 May 16, 2023
58ffdfa
fix ksample rf k-sample-transform
sampan501 May 16, 2023
1c5a4f8
cast v to int for k-sample
sampan501 May 16, 2023
155c2dc
fix kmerf p-values
sampan501 May 16, 2023
786cbd3
update kmerf k-sample
sampan501 May 16, 2023
65229d2
fix kmerf unit tests
sampan501 May 17, 2023
8a343c3
fix build errors
sampan501 May 17, 2023
6f95ab7
remove is_ksamp after saving the values
sampan501 May 17, 2023
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make error trace better
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@sampan501
sampan501 committed May 16, 2023
commit 6ace768b0c80f03babd288d3bb62b956e5e81c93
4 changes: 3 additions & 1 deletion hyppo/independence/_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,9 @@ def _check_nd_indeptest(self):
ny, _ = self.y.shape
if nx != ny:
raise ValueError(
"Shape mismatch, x and y must have shape " "[n, p] and [n, q]."
"Shape mismatch, x and y must have shape [n, p] and [n, q], found shape {} and {}".format(
self.x.shape, self.y.shape
)
)

def _check_min_samples(self):
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3 changes: 2 additions & 1 deletion hyppo/ksample/_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,8 @@ def check_dim(self):
def _check_nd_ksampletest(self, dims):
if len(set(dims)) > 1:
raise ValueError(
"Shape mismatch, inputs must have shape " "[n, p] and [m, p]."
"Shape mismatch, inputs must have shape "
"[n, p] and [m, p]. Found shapes {}".format(list(set(dims)))
)

def _convert_inputs_float64(self):
Expand Down