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Issues list

Maximum number of samples analyzed with dmr multi bug Something isn't working
#229 opened Jul 10, 2024 by antoniognmk
2
How to interpret the results from modkit sample-probs --hist on same RNA datasets bascalled with two different m6A models? question Looking for clarification on inputs and/or outputs
#228 opened Jul 9, 2024 by yinyuanmtu
3
request feature in modkit call-mods enhancement New feature or request
#227 opened Jul 8, 2024 by sathish-t
1
Version mismatch troubleshooting workflow and data preparation questions
#226 opened Jul 7, 2024 by rugilemat
2
Find-motifs error: memory allocation of 61203283984 bytes failed troubleshooting workflow and data preparation questions
#225 opened Jul 5, 2024 by hassebossenbroek
2
Criteria for deciding whether a position is methylated question Looking for clarification on inputs and/or outputs
#224 opened Jul 5, 2024 by angelluigi
3
Much lower pass rate of 5hmC calls than 5mC calls question Looking for clarification on inputs and/or outputs
#222 opened Jul 2, 2024 by hassebossenbroek
5
How to interpret failed reads during modkit extract troubleshooting workflow and data preparation questions
#220 opened Jun 29, 2024 by lkwhite
6
Where does P(canonical) come from? question Looking for clarification on inputs and/or outputs
#219 opened Jun 27, 2024 by lkwhite
2
Problem interpretating table question Looking for clarification on inputs and/or outputs
#217 opened Jun 21, 2024 by MarioRinBarr
5
bedMethyl file has no motif information question Looking for clarification on inputs and/or outputs
#216 opened Jun 20, 2024 by uuwuyi
7
entropy vs sequencing depth/CG content question Looking for clarification on inputs and/or outputs
#214 opened Jun 20, 2024 by ywang285
3
Zero reads in index error troubleshooting workflow and data preparation questions
#211 opened Jun 19, 2024 by setshabaTaukobong
4
bedgraph and bedmethyl only-tab simultaneously enhancement New feature or request
#210 opened Jun 18, 2024 by ShokodkoMariia
2
Error! Parsing Error: Error { input: "m\t1", code: Digit } troubleshooting workflow and data preparation questions
#209 opened Jun 18, 2024 by saky7009
3
Multi-base entropy enhancement New feature or request
#205 opened Jun 11, 2024 by Ge0rges
1
Can you please suggest me ..How can I visualized differential methylation result?
#199 opened Jun 6, 2024 by saky7009
3
Are all CpG reported ? question Looking for clarification on inputs and/or outputs
#192 opened May 28, 2024 by OceaneMion
7
Clarifications on DMR Analysis DMR modkit dmr question Looking for clarification on inputs and/or outputs
#191 opened May 27, 2024 by Proy321
13
How does Modkit handle Large Genome Data? question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#190 opened May 27, 2024 by Yang990-sys
5
DMR without pileup question Looking for clarification on inputs and/or outputs
#183 opened May 16, 2024 by ArnavBharti
4
What is exactly mod_qual? question Looking for clarification on inputs and/or outputs
#181 opened May 12, 2024 by OceaneMion
3
num-reads not working troubleshooting workflow and data preparation questions
#179 opened May 5, 2024 by ShokodkoMariia
3
modkit dmr - failed to read tabix index build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#178 opened May 2, 2024 by lilypeck
6
Validation with ground truth
#177 opened May 1, 2024 by vyx-lucy-kaplun
2
ProTip! Follow long discussions with comments:>50.