Skip to content

Issues: nanoporetech/modkit

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
76 Open 165 Closed
76 Open 165 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How to construe rna004 model [email protected]_DRACH bedMethyl output?
#109 by kir1to455 was closed Jul 22, 2024
3
Trouble accessing m6A sites
#107 by kylepalos was closed Jan 8, 2024
5
Method to keep positions in pileup denominator when no modification probability is reported (i.e. treat probability as zero if unreported)
#106 by OberonDixon was closed Jan 11, 2024
2
How to understand Ndiff and Ndelete?
#105 by cqhhui was closed Dec 26, 2023
4
failed to get modbase info for record & Skipped: no mod tags
#102 by Modernism-01 was closed Dec 27, 2023
2
Skipping reads with supplementary alignments
#101 by samim21 was closed Jan 9, 2024
3
Performance on large bam files
#99 by mattloose was closed Dec 12, 2023
12
version reporting
#98 by mattloose was closed Dec 12, 2023
2
modkit extract "--include-bed" Error: improperly formatted BED line
#97 by pkerbs was closed Dec 11, 2023
3
modkit
#96 by duhuipeng was closed Dec 11, 2023
Does the threshold estimation take into account edge-filter? documentation Improvements or additions to documentation question Looking for clarification on inputs and/or outputs
#94 by billytcl was closed Feb 7, 2024 0.2.5
1
Question about dmr score question Looking for clarification on inputs and/or outputs
#93 by Ge0rges was closed Mar 5, 2024
13
dmr multi - error: 2 values required for '--sample <SAMPLES> <SAMPLES>' but 1 was provided documentation Improvements or additions to documentation
#89 by flokraft85 was closed Dec 5, 2023
5
killed while using --bedgraph
#86 by KloostermanJoukje was closed Nov 21, 2023
2
Output command line seen as error in Slurm
#85 by KloostermanJoukje was closed Nov 20, 2023
2
dmr with coverage threshold enhancement New feature or request
#83 by Ge0rges was closed Dec 2, 2023
7
Zero reads recognized in megalodon basecalled .bam file question Looking for clarification on inputs and/or outputs
#82 by OberonDixon was closed Jan 2, 2024
3
bam index problem question Looking for clarification on inputs and/or outputs
#81 by hyunjokoo was closed Nov 17, 2023
7
Adjust-mods unexpected behaviour. documentation Improvements or additions to documentation
#79 by mattloose was closed Jan 8, 2024
6
Nicer error when --regions-bed file not found
#78 by Ge0rges was closed Dec 2, 2023 0.2.3
3
Implicit-canonical mode
#76 by NickNCL was closed Feb 7, 2024
4
Traditional is confusing.
#75 by mattloose was closed Nov 2, 2023
6
modkit dmr multi has incorrect output, and fails to do pairwise comparison
#74 by Ge0rges was closed Nov 3, 2023
23
modkit dmr -o should either create the output folder it doesn't exist or be clearer
#73 by Ge0rges was closed Oct 30, 2023
2
modkit dmr detect header in the regions BED
#72 by Ge0rges was closed Dec 2, 2023 0.2.3
1
ProTip! no:milestone will show everything without a milestone.