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Issues list

Error during installation question Looking for clarification on inputs and/or outputs
#180 by molecule53 was closed May 21, 2024
7
Ign.
#176 by Ge0rges was closed May 1, 2024
DMR: processed 0 sites successfully
#175 by Hannah1746 was closed Apr 29, 2024
3
Error! zero reads found in bam index troubleshooting workflow and data preparation questions
#171 by habibsaky was closed Apr 26, 2024
5
Not all genomic position represented question Looking for clarification on inputs and/or outputs
#170 by OceaneMion was closed Apr 22, 2024
4
Error! unable to open SAM/BAM/CRAM index troubleshooting workflow and data preparation questions
#169 by habibsaky was closed Apr 26, 2024
8
modkit dmr pair - no significance values in output
#168 by lilypeck was closed Apr 19, 2024
5
error: failed to run custom build command for libz-sys v1.1.16
#167 by habibsaky was closed Apr 18, 2024
6
DMR pair fails with equal number of replicates bug Something isn't working build-available custom build produced for fix.
#165 by dietvin was closed Apr 18, 2024
3
Questions about mod_qual value in modkit extract question Looking for clarification on inputs and/or outputs
#162 by xiangpingyu was closed Apr 24, 2024
4
Questions Regarding the Counts of Nmod and Nnocall bug Something isn't working build-available custom build produced for fix.
#160 by hee014789 was closed Apr 27, 2024
16
Modification codes
#157 by IanCodes was closed Apr 8, 2024
3
Issue that "#failed to get modbase info for record XXX" troubleshooting workflow and data preparation questions
#156 by xiangpingyu was closed Apr 16, 2024
6
Issues related to 'modkit'
#155 by xiangpingyu was closed Apr 6, 2024
modkit installation
#152 by mocherry was closed Apr 4, 2024
1
--ignore argument doesn't ignore modifications properly question Looking for clarification on inputs and/or outputs
#151 by kaanokay was closed Apr 5, 2024
6
Multiple sites failed to process during dmr pair build-available custom build produced for fix.
#149 by ArnavBharti was closed Apr 16, 2024
11
Issue when inserting a region BED file build-available custom build produced for fix.
#146 by lance0499 was closed Apr 16, 2024
6
Is there a way to have modkit handle duplicate reads? build-available custom build produced for fix.
#145 by billytcl was closed Apr 16, 2024
4
Modkit dmr pair not taking in multiple replicates
#142 by lance0499 was closed Mar 7, 2024
3
[docs] Documentation on GH Pages down
#141 by ArtRand was closed Mar 5, 2024
1
Using multiple samples in modkit dmr build-available custom build produced for fix.
#140 by ArnavBharti was closed Mar 17, 2024
12
Convert bam to pseudo bisulfite output build-available custom build produced for fix.
#139 by faulk-lab was closed Jun 24, 2024
38
pyspoa
#138 by kawito was closed Feb 26, 2024
3
bedmethyl Nvalid coverage vs samtools depth coverage
#137 by osvatic was closed Feb 22, 2024
2
ProTip! Updated in the last three days: updated:>2024-07-08.