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Issues list

Merging data from several basecaller runs
#402 opened Nov 7, 2024 by dylanlawrencebio updated Nov 7, 2024
RNA002 model
#378 opened Feb 1, 2024 by shizhuoxing updated Oct 12, 2024
1
NCM_2024 New models
#400 opened Sep 20, 2024 by wangziyuan66 updated Sep 20, 2024
undefined symbol: cublasGemmEx
#399 opened Sep 12, 2024 by Sheng-T updated Sep 12, 2024
[Errno 2] No such file or directory: '/data/training/ctc-data/dataset.py'
#391 opened Jun 4, 2024 by baronfairy updated Aug 6, 2024
2
how bonito normalize raw signals when save-ctc
#374 opened Dec 11, 2023 by xieyy46 updated Jul 19, 2024
2
Retrieving every paths examined in beam search module
#397 opened Jun 25, 2024 by seungbeom-han updated Jun 25, 2024
Training Data Used for Pre-made models
#396 opened Jun 20, 2024 by xav611 updated Jun 20, 2024
Is it possible to use a Bonito trained or fine-tuned model with dorado duplex basecalling.
#395 opened Jun 17, 2024 by mark-sor2 updated Jun 17, 2024
bonito duplex runs out of memory
#390 opened May 29, 2024 by sathish-t updated May 30, 2024
1
> no suitable ctc data to write when basecalling with save-ctc flag
#308 opened Oct 1, 2022 by HanielF updated May 23, 2024
2
Applying INT8 quantization, just like in Dorado
#388 opened Apr 14, 2024 by wtrinh8 updated Apr 24, 2024
2
AttributeError: module 'collections' has no attribute 'Iterable'
#316 opened Oct 27, 2022 by derekstein updated Apr 21, 2024
1
how to calibrate CTC-CRF model base qualities?
#375 opened Dec 15, 2023 by lpryszcz updated Apr 12, 2024
1
RNA004 Does not output any CTC data question Further information is requested
#379 opened Feb 5, 2024 by VBHarrisN updated Apr 4, 2024
@iiSeymour
3
Chunks.npy and Dataset.py not being generated
#385 opened Apr 1, 2024 by Sgreenfield9 updated Apr 4, 2024
2
DNA 9.4 model info
#360 opened Aug 21, 2023 by lkwhite updated Mar 26, 2024
1
bonito WASM
#383 opened Mar 13, 2024 by lpryszcz updated Mar 13, 2024
Preparing training data for bonito
#137 opened Mar 22, 2021 by ktan8 updated Mar 13, 2024
8
Feature request: export the list of reads used to train a model
#382 opened Feb 19, 2024 by andreaswallberg updated Feb 19, 2024
Dropped ctc_min_accuracy/coverage parameter
#214 opened Dec 15, 2021 by jdemeul updated Feb 5, 2024
4
Trimming CTC data
#253 opened May 7, 2022 by mbhall88 updated Jan 31, 2024
3
bonito basecall model refinement preprocessing memory issues
#361 opened Aug 28, 2023 by CodingKaiser updated Jan 24, 2024
1
Short basecalled R9.4.1 reads using both trained and default models in bonito, but not in guppy
#376 opened Dec 20, 2023 by andreaswallberg updated Dec 20, 2023
Update for remora 3.0.0 trained model?
#373 opened Dec 1, 2023 by Mathias-Boulanger updated Dec 13, 2023
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