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Issues list

Bonito Convert
#123 opened Mar 2, 2021 by addyblanch
@iiSeymour
16
Attempting to deserialize object on a CUDA device but torch.cuda.is_available() is False
#287 opened Jul 18, 2022 by rckeerthivasan
15
Problems installing and with the first run
#250 opened Apr 22, 2022 by fernanarr
@iiSeymour
12
RuntimeError: CUDA error: an illegal memory access was encountered
#233 opened Feb 23, 2022 by kuanchiun
@vellamike
12
Multi GPU train fails bug Something isn't working
#64 opened Nov 5, 2020 by usamec
@iiSeymour
12
RNA model for bonito enhancement New feature or request
#16 opened Mar 20, 2020 by CDieterich
@iiSeymour
10
bonito mod-calling with remora model question Further information is requested
#278 opened Jul 5, 2022 by hd2326
@iiSeymour
9
Lowered barcode recognition of bonito basecalled data with Bonito 0.4.0
#176 opened Aug 30, 2021 by menickname
@iiSeymour
9
Problem starting bonito after Download (missing mappy Module)
#267 opened Jun 13, 2022 by AzlanNI
@iiSeymour
8
Preparing training data for bonito
#137 opened Mar 22, 2021 by ktan8
8
Help train
#241 opened Mar 17, 2022 by simonbrd
7
Question about training dataset for pre-trained model
#236 opened Mar 9, 2022 by Howard-Liang
6
Fast5 not getting proccesed. question Further information is requested
#220 opened Dec 30, 2021 by AlbertoOsorio
@iiSeymour
6
bonito export
#346 opened Jun 7, 2023 by fergsc
5
TypeError: Expected fp16 but received torch.float32
#269 opened Jun 15, 2022 by Saranya-nanobiophotonics-lab
5
Initialization error (related to koi)?
#234 opened Mar 4, 2022 by snajder-r
@vellamike
5
bonito with openvino error
#58 opened Oct 23, 2020 by studyfranco
@iiSeymour
5
Understanding the output shape and scores.
#327 opened Jan 23, 2023 by mamdouhJ
4
basecaller freezes with CUDA error
#281 opened Jul 7, 2022 by ADHDrian
4
Bonito model training using WSL2: "RuntimeError: CUDA error: unknown error"
#249 opened Apr 5, 2022 by jhammery
4
Dropped ctc_min_accuracy/coverage parameter
#214 opened Dec 15, 2021 by jdemeul
4
basecaller compute_scores koi TypeError
#208 opened Dec 10, 2021 by jdemeul
4
CUDA out of memory
#205 opened Dec 9, 2021 by elohimarthur
@iiSeymour
4
question about 'bonito train' help wanted Extra attention is needed
#178 opened Sep 7, 2021 by Flower9618
@iiSeymour
4
Question about model training question Further information is requested
#175 opened Aug 20, 2021 by kuanchiun
@iiSeymour
4
ProTip! no:milestone will show everything without a milestone.