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90 Open 246 Closed
90 Open 246 Closed
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Issues list

Mean QScore calculation can be much quicker.
#336 opened Mar 24, 2023 by rhpvorderman
Ampere GPU RuntimeError Cuda and slow basecalling speed
#335 opened Mar 20, 2023 by jorisbalc
Issue with bonito export --format dorado (v0.6.2)
#331 opened Feb 9, 2023 by touala
Clarification on the provided training data enhancement New feature or request
#329 opened Feb 3, 2023 by newalexander
@iiSeymour
2
Understanding the output shape and scores.
#327 opened Jan 23, 2023 by mamdouhJ
4
Memory issue when try to build customised model
#326 opened Jan 10, 2023 by CWYuan08
3
AttributeError: module 'collections' has no attribute 'Iterable'
#316 opened Oct 27, 2022 by derekstein
1
chunk_lengths is missing
#315 opened Oct 27, 2022 by DelphIONe
Bonito with modified base rerio model
#312 opened Oct 13, 2022 by vivekbhr
2
> no suitable ctc data to write when basecalling with save-ctc flag
#308 opened Oct 1, 2022 by HanielF
2
Question about data formatting
#307 opened Sep 28, 2022 by dberma15
Relax requests version requirement?
#305 opened Sep 16, 2022 by godotgildor
"dataset.py" in bonito train
#298 opened Aug 10, 2022 by wangziyuan66
Much lower reads quality than Guppy bug Something isn't working
#297 opened Aug 8, 2022 by yanchunzhang
@iiSeymour
3
Help us on Bonito expected run time
#296 opened Aug 3, 2022 by Saranya-nanobiophotonics-lab
@iiSeymour
3
Attempting to deserialize object on a CUDA device but torch.cuda.is_available() is False
#287 opened Jul 18, 2022 by rckeerthivasan
15
Accuracy inconsitency is observed
#286 opened Jul 18, 2022 by waka45
2
How long would it take to convert downloaded dna_r9.4.1.hdf5 training dataset in Tesla V100?
#285 opened Jul 18, 2022 by Saranya-nanobiophotonics-lab
1
basecaller freezes with CUDA error
#281 opened Jul 7, 2022 by ADHDrian
4
Model output shape does not make sense.
#280 opened Jul 6, 2022 by dberma15
3
bonito mod-calling with remora model question Further information is requested
#278 opened Jul 5, 2022 by hd2326
@iiSeymour
9
TypeError: Expected fp16 but received torch.float32
#269 opened Jun 15, 2022 by Saranya-nanobiophotonics-lab
5
Problem starting bonito after Download (missing mappy Module)
#267 opened Jun 13, 2022 by AzlanNI
@iiSeymour
8
wondering crf_beam package beam search code accessible or not
#262 opened Jun 2, 2022 by zlannnn
Test Data and Base Calling Accuracy
#258 opened May 27, 2022 by liyewen521
ProTip! What’s not been updated in a month: updated:<2024-06-11.