Stars
RFMIX - Local Ancestry and Admixture Inference Version 2
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
Machine learning-based approach for the inference of gene regulatory networks from expression data.
rdiversity - An R package for measuring similarity-sensitive diversity
Estimation of pairwise distances under a probabilistic framework
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
R package for Bayesian genomic analyses of hybrid zones, including Bayesian genomic clines
Calculate Hybrid Index and Heterozygosity from SNP data
A toolkit for identifying recombination and recombinant genotypes
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
Code for the Manifold Boundary Approximation Method
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
This function implements quantile normalization in python matrix
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
Retrieves your activation data (activation_bytes) from Audible servers. Using https://github.com/inAudible-NG/tables project instead is recommended.
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes