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Colorado State University
- Fort Collins, CO
- https://lcwheeler.github.io/
- @LCWheeler9000
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lcwheeler.github.io Public
Forked from daattali/beautiful-jekyll✨ Build a beautiful and simple website in literally minutes. Demo at https://deanattali.com/beautiful-jekyll
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penstemon_jonesii_analyses Public
Analysis of introgression, local ancestry, and phenotypes from P. eatonii x P. laevis hybrid zones
GNU General Public License v3.0 UpdatedNov 6, 2023 -
penstemon_novaseq Public
Forked from benstemon/dasanthera_novaseqPhylogenomic analyses in Penstemon
Jupyter Notebook UpdatedJun 2, 2023 -
enzo Public
enzo is a Python wrapper for Tellurium allowing evolution of metabolic models between defined states
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were-anc-less-specific Public
Forked from harmslab/were-anc-less-specificnotebooks and scripts to reproduce analyses from "Were Ancestral Proteins Less Specific" manuscript
Jupyter Notebook MIT License UpdatedNov 27, 2020 -
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seirsplus Public
Forked from ryansmcgee/seirsplusModels of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Python MIT License UpdatedMay 3, 2020 -
ndlib Public
Forked from GiulioRossetti/ndlibNetwork Diffusion Library - (for NetworkX and iGraph)
Python BSD 2-Clause "Simplified" License UpdatedApr 29, 2020 -
COVID-19 Public
Forked from CSSEGISandData/COVID-19Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
UpdatedApr 21, 2020 -
augur Public
Forked from nextstrain/augurPipeline components for real-time phylodynamic analysis
Python GNU Affero General Public License v3.0 UpdatedApr 3, 2020 -
mesa Public
Forked from projectmesa/mesaMesa is an agent-based modeling framework in Python
Python Other UpdatedMar 29, 2020 -
covid19-vent-list Public
Forked from PubInv/covid19-vent-listA list projects to make emergency ventilators in response to COVID-19, focusing on free-libre open source
Creative Commons Zero v1.0 Universal UpdatedMar 28, 2020 -
PathParser Public
Forked from Chaowu88/PathParserPython GNU General Public License v3.0 UpdatedMar 9, 2020 -
herbivory-defense-simulation Public
Forked from BeerTheorySociety/herbivory-defense-simulationA computational approach to model the evolution of herbivory defense compounds in plants.
UpdatedFeb 7, 2020 -
gpmap Public
Forked from harmslab/gpmapA Python API for managing genotype-phenotype map data
Python UpdatedAug 16, 2019 -
dna-seq-gatk-variant-calling Public template
Forked from snakemake-workflows/dna-seq-gatk-variant-callingThis Snakemake pipeline implements the GATK best-practices workflow
Python MIT License UpdatedJun 25, 2019 -
rna-seq-star-deseq2 Public template
Forked from snakemake-workflows/rna-seq-star-deseq2RNA-seq workflow using STAR and DESeq2
Python MIT License UpdatedJun 17, 2019 -
orbweaver Public
Orbweaver is a python package for performing gene co-expression network analysis
Jupyter Notebook MIT License UpdatedMay 23, 2019 -
Arboretum2.0 Public
Forked from Roy-lab/Arboretum2.0The Arboretum 2.0 is the next release of the original code of Arboretum. It makes running Arboretum easier by taking care of initial cluster assignments.
C UpdatedApr 6, 2019 -
rna-seq-kallisto-sleuth Public template
Forked from snakemake-workflows/rna-seq-kallisto-sleuthA workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.
Python MIT License UpdatedApr 5, 2019 -
pyway Public
Pyway is a simple Python package for simulating Conway's Game of Life
Jupyter Notebook The Unlicense UpdatedApr 3, 2019 -
old-website Public
Forked from barryclark/jekyll-nowBuild a Jekyll blog in minutes, without touching the command line.
CSS MIT License UpdatedMar 24, 2019 -
antho-comp-evo-materials Public
This repository contains the supplement files referenced in "Computational modeling of anthocyanin pathway evolution".
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clust Public
Forked from BaselAbujamous/clustAutomatic and optimised consensus clustering of one or more heterogeneous datasets
Python Other UpdatedFeb 28, 2019 -
Toolkit for processing sequences in FASTA/Q formats
C MIT License UpdatedFeb 28, 2019 -
SOMPY Public
Forked from sevamoo/SOMPYA Python Library for Self Organizing Map (SOM)
Jupyter Notebook Apache License 2.0 UpdatedFeb 20, 2019 -
TranscriptomeAssemblyTools Public
Forked from harvardinformatics/TranscriptomeAssemblyToolsA collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.
Python UpdatedFeb 19, 2019 -
emissions-estimator Public
A Jupyter notebook containing functions that allow the user to estimate their annual CO2 emissions