Enable CI for master and merges

Enable CI config. for the master branch and merge requests.
At this moment, only the conda package build is tested, but more
tests will be added.

.Rbuildignore

@@ -0,0 +1,2 @@
+^.*\.Rproj$
+^\.Rproj\.user$

.gitignore

@@ -0,0 +1,4 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

.gitlab-ci.yml

@@ -0,0 +1,22 @@
+image: continuumio/miniconda3:latest
+
+before_script:
+ - conda config --set always_yes yes --set changeps1 no
+ - conda update -n base conda
+ - conda info -a
+ - conda config --add channels defaults
+ - conda config --add channels bioconda
+ - conda config --add channels conda-forge
+ - conda install mamba
+ - mamba install boa
+ - cd .tests/
+ - conda create -y -q -n beyondcell_test 
+
+conda_build:
+ stage: build
+ only:
+ - master
+ - merge_requests
+ script:
+ - source activate beyondcell_test
+ - bash build_conda_package.sh ${PYTHON_VERSION}

.tests/build_conda_package.sh

@@ -0,0 +1,11 @@
+
+if [ -z "$1" ]
+then
+ PYTHON_VERSION=3.6
+else
+ PYTHON_VERSION=$1
+fi
+
+git clone https://gitlab.com/bu_cnio/conda-recipes
+conda mambabuild conda-recipes/r-beyondcell --output-folder ./
+mamba install --use-local --update-deps linux-64/r-beyondcell-*.tar.bz2

DESCRIPTION

@@ -2,7 +2,7 @@ Package: beyondcell
 Type: Package
 Title: A Tool for the Analysis of Tumour Therapeutic Heterogeneity in 
  single-cell RNA-seq
-Version: 0.99.6
+Version: 1.0.0
 Authors@R: c(person("Coral", "Fustero-Torre", email = "[email protected]", 
  role = "aut"), person("Maria Jose", "Jimenez-Santos", 
  email = "[email protected]", role = c("aut", "cre")), person("Santiago",

NAMESPACE

@@ -1,17 +1,17 @@
 # Generated by roxygen2: do not edit by hand
 
 export(BreakString)
+export(CaseFraction)
 export(CreatebcObject)
-export(FilteredIDS)
 export(FindDrugs)
-export(GeneCase)
 export(GenerateGenesets)
+export(GetIDs)
 export(GetStatistics)
 export(ListFilters)
 export(Mean.Med.SD)
 export(SwitchPoint)
 export(bc4Squares)
-export(bcAddMetatada)
+export(bcAddMetadata)
 export(bcCellCycle)
 export(bcClusters)
 export(bcHistogram)
@@ -25,7 +25,7 @@ export(bcSubset)
 export(bcUMAP)
 export(center_scale_colour_stepsn)
 export(colMinus)
-export(get_colour_stepsn)
+export(get_colour_steps)
 export(minus)
 export(rankSigs)
 import(Seurat)