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Issues list

Fingerprint SNP positions should be hg38 coordinates, not GRCh37
#39 opened Jun 5, 2024 by mdshw5 updated Jun 5, 2024
Feature: Automatically determine sample type using gene expression enhancement New feature or request
#30 opened Sep 16, 2022 by mdshw5 updated May 8, 2024
5 tasks
@mdshw5
Exit codes for pisces commands should be nonzero on errors
#35 opened Mar 15, 2024 by mdshw5 updated Mar 15, 2024
@mdshw5
Update list of problematic protein_coding genes to exclude during --scale-tpm
#31 opened Nov 18, 2022 by mdshw5 updated Nov 18, 2022
Add DeprecationWarning for pisces summarize-qc tables enhancement New feature or request
#27 opened May 25, 2022 by mdshw5 updated May 25, 2022
@mdshw5
Add gene description to annotation matrix enhancement New feature or request
#18 opened Aug 18, 2021 by mdshw5 updated Sep 1, 2021
@mdshw5
1
Add "tidy" data output as an option enhancement New feature or request
#16 opened Jun 25, 2021 by mdshw5 updated Jun 25, 2021
@mdshw5
Support for differential transcript expression enhancement New feature or request
#7 opened Jan 13, 2021 by mdshw5 updated Jan 13, 2021
@mdshw5
QC metrics we need to aggregate enhancement New feature or request
#5 opened Dec 17, 2020 by mdshw5 updated Dec 17, 2020
4 tasks
@mdshw5
Detect binaries automatically if they are in the PATH enhancement New feature or request
#4 opened Dec 10, 2020 by guma44 updated Dec 14, 2020
@mdshw5
1
Build Docker images with pre-installed PISCES
#1 opened Dec 2, 2020 by mdshw5 updated Dec 2, 2020
2 tasks
@mdshw5
1
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