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Support for differential transcript expression #7

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mdshw5 opened this issue Jan 13, 2021 · 0 comments
Open

Support for differential transcript expression #7

mdshw5 opened this issue Jan 13, 2021 · 0 comments
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enhancement New feature or request

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mdshw5 commented Jan 13, 2021

It's not clear if DESeq2 is the best choice for DTE, or if we should use salmon's inferential replicates and run swish instead. If the latter, then it makes sense to switch from DESeq2 to swish for both DTE and DGE analysis.
@mdshw5 mdshw5 added the enhancement New feature or request label Jan 13, 2021
@mdshw5 mdshw5 self-assigned this Jan 13, 2021
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