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Build Docker images with pre-installed PISCES #1

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mdshw5 opened this issue Dec 2, 2020 · 1 comment
Open
2 tasks

Build Docker images with pre-installed PISCES #1

mdshw5 opened this issue Dec 2, 2020 · 1 comment
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mdshw5 commented Dec 2, 2020

  • Add a Dockerfile to define build process and entry point
  • Set up gh-actions to build docker images and publish to Docker hub
@mdshw5 mdshw5 self-assigned this Dec 2, 2020
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mdshw5 commented Dec 2, 2020

@guma44 I'll update this issue with progress and issues building a docker image. We should discuss how to integrate the container in Cromwell. I find this in the Cromwell docs - is it a relevant starting point? baseCommand can be the pisces command, but I'm not sure about specifying inputs/outputs.

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