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Fingerprint SNP positions should be hg38 coordinates, not GRCh37 #39

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mdshw5 opened this issue Jun 5, 2024 · 0 comments

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mdshw5 commented Jun 5, 2024 •

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Need to edit the VCF header: https://github.com/Novartis/pisces/blob/master/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py#L173-L206
Liftover the positions in the 4th column of https://github.com/Novartis/pisces/blob/master/pisces/data/fp_kmers.txt

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