Tags: JuliaIO/HDF5.jl
Tags
Fix H5Zzstd error reporting and decompressed size behavior (#1151) * Fix H5Zzstd error reporting and decompressed size behavior * Remove commented out code * Use async so that callback function returns properly * Fix formatting
[Diff since v0.17.1](v0.17.1...v0.17.2) **Merged pull requests:** - Clean up Dataspaces (#1104) (@simonbyrne) - mention package extension for MPI (#1122) (@ranocha) - Update HISTORY.md (#1125) (@musm) - Fix variable length strings as attributes (#1130) (@simonbyrne) - Update helpers.jl with initial value for Ref{Cuint} (#1138) (@david-macmahon) - update CompatHelper.yml and also run it for subpackages (#1139) (@antholzer) - bump compat for filter package dependencies (#1140) (@baumgold) - Bump codecov/codecov-action from 3 to 4 (#1141) (@dependabot[bot]) - Bump CodecZstd compat to 0.8, H5Zzstd version to 0.1.2 (#1144) (@mkitti) - Fix H5F_LIBVER_LATEST, map lib 1.15 to H5F_LIBVER_V116 (#1145) (@mkitti) - Add Julia 1.11 nightly to tests (#1146) (@mkitti) - Remove unused type var in write_dataset(... (#1147) (@mkitti) **Closed issues:** - Can't get HDF5.jl work with Julia running in docker (julia:1.8-alpine3.17) - can't find libmpi.so.12 (#1123) - Segfault when writing variable length string as attribute (#1129) - Support szip (freely) (#1132) - Installing HDF5.jl on ARM M1 (#1133) - HDF5.jl triggers segfault in ccall with openmp+clang(m1) with julia 1.10 (#1134) - h5_is_library_threadsafe() gives unreliable results due to unspecified initial value (#1137) - The HDF Group CI (#1142)
[Diff since v0.17.0](v0.17.0...v0.17.1) **Merged pull requests:** - Bump filter versions, set compat with HDF5.jl 0.17 (#1110) (@mkitti) - Add HDF5.Filters.Registered module (#1111) (@mkitti) - In docs, suggest passing HDF5 module to set_preferences!() instead of UUID (#1113) (@johnomotani) - Add convenience function `set_libraries!` (#1115) (@JoshuaLampert) - Update documentation about using files in memory (#1118) (@denglerchr) - Fix `h5readattr` docstring (#1119) (@Sbozzolo) - Bump version to 0.17.1 (#1120) (@mkitti) **Closed issues:** - Windows test failures for SZIP compression (#1106) - Add to list of known preferences (#1112) - Convenience function to use custom or system provided HDF5 binaries (#1114)
[Diff since v0.16.16](v0.16.16...v0.17.0) **Closed issues:** - `_memcpy!` not defined on nightly (#1094) **Merged pull requests:** - Parse doxygen tag files (#1043) (@mkitti) - Provide high level syntax for dealing with HDF5 files in memory (#1077) (@mkitti) - JuliaCon 2023 Presentation (#1090) (@mkitti) - Fix doxygen URLs from Java to C (#1099) (@mkitti) - allow keyword args to open_group, open_dataset, open_datatype (#1100) (@simonbyrne) - expand exported dataspace api functions (#1101) (@simonbyrne) - Bump actions/checkout from 3 to 4 (#1103) (@dependabot[bot]) - mark SZIP tests on Windows as broken (#1107) (@simonbyrne) - Fix datatype documentation (#1108) (@mkitti)
[Diff since v0.16.15](v0.16.15...v0.16.16) **Closed issues:** - Switch to Preferences for using system hdf5 (#1037) - Juliacon 2023? (#1039) - Test HDF5 1.14.0 from BinaryBuilder (#1053) - compat entry for HDF5_jll (#1065) - Copy a group of data from a file to another (#1070) - release-0.16 branch created (#1074) - HDF5.jl logo not optimal for dark mode (#1081) - `maxdims` or `max_dims` in `dataspace()` (#1083) - Using `Type` and `Dataspace` in `create_dataset()` (#1084) **Merged pull requests:** - Add initial support for H5Dchunk_iter (#1031) (@mkitti) - Use Preferences for using custom hdf5 library (#1061) (@JoshuaLampert) - MPI support via package extensions (weak dependency) (#1062) (@ranocha) - Fix _typed_load fast path for Julia 1.10 (currently nightly) (#1075) (@mkitti) - Simplify formatter check (#1078) (@simonbyrne) - Fix #1083 maxdims -> max_dims in dataspace documentation (#1085) (@mkitti) - Allow create_dataset to take a Type and Dataspace, Fix #1084 (#1086) (@mkitti) - Update light and dark logos for readme (#1087) (@musm) - Fixup readme logo links and readme style (#1088) (@musm) - Upload logo as curves for font rendering independence (#1089) (@musm) - Attempt to fix documentation (#1091) (@mkitti) - doc typo: attributes(parent), not attribute(parent) (#1095) (@stevengj) - Port non-breaking changes for 0.16.16 (#1098) (@mkitti)
[Diff since v0.16.13](v0.16.13...v0.16.14) **Closed issues:** - Windows mmap test failures (#89) - threadsafe? (#139) - thread safety? (#259) - FYI: HDF5 query language [needs support?] (#322) - Cannot create mmap file on windows (#357) - Create our own binary artifacts (#569) - Base.show method for Properties (#763) - v0.16 tracker and discussion (#802) - It seems h5info is not implemented: is there an alternative? (#815) - Crash when using from multiple threads (#835) - Finalizing correctly when using MPI (#852) - safe multi-threaded writing (#853) - Read all attributes into a dictionary (or structure) (#857) - Empty (extensible) dataset cannot be read back (#859) - create_dset triggers race condition (#862) - Finalizers cause exception_access_violation while using HDF5 from a thread. (#990) - add branch protection to master (#1036) - OrderedCollections, an implicit dependency (#1046) - Finalizer error when rapidly writing to HDF5 (#1048) - Not compatible with `TerminalMenus` in the stdlib (#1050) - Unexpected create_group key from readdlm string data (#1055) **Merged pull requests:** - Make `begin` as the first index of a `Dataset` work (#1027) (@machakann) - correct docs on JULIA_HDF5_PATH search path (#1032) (@stevengj) - add missing docstring for Group (#1034) (@simonbyrne) - close property lists, simplify mpio test (#1035) (@simonbyrne) - Clean up MPI (#1038) (@simonbyrne) - Bump H5Zblosc version to 0.1.1 (#1040) (@mkitti) - Update docs/Manifest.toml for H5Zblosc v0.1.1 (#1041) (@mkitti) - some fixes for docs (#1042) (@simonbyrne) - fix implicit OrderedCollections dependency on FileIO (#1047) (@simonbyrne) - Implement try_close_finalizer, fix #1048 (#1049) (@mkitti) - Always load even if deps aren't satisfied (#1051) (@jpsamaroo) - docs: mention that low-level functions are in API submodule (#1052) (@jwahlstrand) - use Cstring in ccall (#1056) (@simonbyrne)
[Diff since v0.16.12](v0.16.12...v0.16.13) **Merged pull requests:** - add support for read-only s3 virtual driver (#1010) (@gszep) - Add built-in support to write compound data types (#1013) (@tamasgal) - Update HISTORY.md (#1017) (@musm) - Fix virtual dataset tests (#1019) (@mkitti) - Add JuliaFormatterTool and format.jl script (#1020) (@mkitti) - add lock around all API calls (#1021) (@simonbyrne) - Fix virtual dataset tests, from mkitti/api_lock_preferences (#1023) (@mkitti) - Remove use of `tempname()` from `setindex!` of an `AttributeDict` (#1026) (@nhz2) - fix invalidations from loading LoopVectorization.jl (#1028) (@ranocha)
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