Commits

Commits on Feb 15, 2024

move gatk4/svcluster to nf-test (nf-core#4919 )
matthdsm
committedFeb 15, 2024
Move gatk4/svannotate to nf-test (nf-core#4917 )

matthdsm
and
maxulysse
committedFeb 15, 2024
move gatk4/splitncigarreads to nf-test (nf-core#4916 )
matthdsm
committedFeb 15, 2024
move gatk4/mergevcfs to nf-test (nf-core#4913 )

matthdsm
and
nvnieuwk
committedFeb 15, 2024

Commits on Feb 14, 2024

convert gatk4/reblockgvcf to nf-test (nf-core#4914 )
matthdsm
committedFeb 14, 2024
move genomicsdbimport to nf-test (nf-core#4911 )
matthdsm
committedFeb 14, 2024
Move bam_create_som_pon_gatk to nf-test (nf-core#4904 )

matthdsm
and
nvnieuwk
committedFeb 14, 2024

Commits on Jan 31, 2024

Bump/bclconvert (nf-core#4819 )
matthdsm
committedJan 31, 2024

Commits on Oct 20, 2023

biobambam/bamsormadup: add meta to fasta input (nf-core#4179 )
matthdsm
committedOct 20, 2023
fix PE inputs (nf-core#4178 )
matthdsm
committedOct 20, 2023

Commits on Oct 16, 2023

bump picard (nf-core#3966 )
matthdsm
committedOct 16, 2023

Commits on Aug 10, 2023

Update bclconvert readme (nf-core#3646 )

matthdsm
and
adamrtalbot
committedAug 10, 2023

Commits on Jul 14, 2023

new module: samtools/import (nf-core#3642 )
matthdsm
committedJul 14, 2023

Commits on May 31, 2023

bump fastp (nf-core#3470 )
matthdsm
committedMay 31, 2023

Commits on May 15, 2023

Bump fastp (nf-core#3419 )
matthdsm
committedMay 15, 2023

Commits on May 10, 2023

New module: samtools/cat (nf-core#3394 )
matthdsm
committedMay 10, 2023

Commits on May 5, 2023

add bed input to hsmetrics (nf-core#3379 )
matthdsm
committedMay 5, 2023

Commits on May 4, 2023

Update/picard hsmetrics (nf-core#3373 )
matthdsm
committedMay 4, 2023

Commits on May 3, 2023

Trinity: fix mem designation (nf-core#3363 )
matthdsm
committedMay 3, 2023

Commits on Apr 24, 2023

update samtools (nf-core#3313 )
matthdsm
committedApr 24, 2023

Commits on Apr 5, 2023

gatk/markduplicatesspark: add bam index output (nf-core#3263 )
matthdsm
committedApr 5, 2023

Commits on Mar 31, 2023

bump snapaligner (nf-core#3230 )
matthdsm
committedMar 31, 2023

Commits on Mar 21, 2023

Bump gatk4 across the board (nf-core#3045 )
matthdsm
committedMar 21, 2023
Fix memory usage for most java tools (nf-core#3064 )

committedMar 21, 2023

Commits on Mar 14, 2023

Limit gatk4 heap size (nf-core#3027 )
matthdsm
committedMar 14, 2023

Commits on Mar 8, 2023

add module bcftools/split (nf-core#2996 )
matthdsm
committedMar 8, 2023
add module goleft/indexsplit (nf-core#2989 )

matthdsm
and
nvnieuwk
committedMar 8, 2023

Commits on Mar 1, 2023

bump picard version across the board (nf-core#2935 )
matthdsm
committedMar 1, 2023

Commits on Feb 20, 2023

bcl2fastq: update docker image and readme (nf-core#2897 )
matthdsm
committedFeb 20, 2023

Commits on Feb 17, 2023

fix bclconvert interop output (nf-core#2887 )
matthdsm
committedFeb 17, 2023

Commits on Jan 24, 2023

New module: Somalier ancestry (nf-core#2760 )

committedJan 24, 2023

Commits on Jan 23, 2023

fix bamsormadup metrics (nf-core#2764 )
matthdsm
committedJan 23, 2023

Commits on Jan 19, 2023

fix bclconvert/bcl2fastq globs (nf-core#2745 )
matthdsm
committedJan 19, 2023

Commits on Jan 11, 2023

bump snap version (nf-core#2735 )
matthdsm
committedJan 11, 2023

Commits on Jan 9, 2023

bump multiqc to v1.14 (nf-core#2722 )
matthdsm
committedJan 9, 2023