bump snapaligner (nf-core#3230)

EgorGuga · Mar 31, 2023 · d629f06 · d629f06
1 parent 8f65c1a
commit d629f06
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Showing 4 changed files with 14 additions and 14 deletions.
diff --git a/modules/nf-core/snapaligner/align/main.nf b/modules/nf-core/snapaligner/align/main.nf
@@ -2,10 +2,10 @@ process SNAPALIGNER_ALIGN {
  tag "$meta.id"
  label 'process_high'
 
- conda "bioconda::snap-aligner=2.0.2"
+ conda "bioconda::snap-aligner=2.0.3"
  container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
- 'https://depot.galaxyproject.org/singularity/snap-aligner:2.0.2--hd03093a_0':
- 'quay.io/biocontainers/snap-aligner:2.0.2--hd03093a_0' }"
+ 'https://depot.galaxyproject.org/singularity/snap-aligner:2.0.3--hd03093a_0':
+ 'quay.io/biocontainers/snap-aligner:2.0.3--hd03093a_0' }"
 
  input:
  tuple val(meta) , path(reads, stageAs: "?/*")

diff --git a/modules/nf-core/snapaligner/index/main.nf b/modules/nf-core/snapaligner/index/main.nf
@@ -2,10 +2,10 @@ process SNAPALIGNER_INDEX {
  tag "$fasta"
  label 'process_high'
 
- conda "bioconda::snap-aligner=2.0.2"
+ conda "bioconda::snap-aligner=2.0.3"
  container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
- 'https://depot.galaxyproject.org/singularity/snap-aligner:2.0.2--hd03093a_0':
- 'quay.io/biocontainers/snap-aligner:2.0.2--hd03093a_0' }"
+ 'https://depot.galaxyproject.org/singularity/snap-aligner:2.0.3--hd03093a_0':
+ 'quay.io/biocontainers/snap-aligner:2.0.3--hd03093a_0' }"
 
  input:
  tuple val(meta), path(fasta), path(altcontigfile), path(nonaltcontigfile), path(altliftoverfile)

diff --git a/tests/modules/nf-core/snapaligner/align/test.yml b/tests/modules/nf-core/snapaligner/align/test.yml
@@ -1,23 +1,23 @@
 - name: snapaligner align test_snapaligner_single
  command: nextflow run ./tests/modules/nf-core/snapaligner/align -entry test_snapaligner_single -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/snapaligner/align/nextflow.config
  tags:
- - snapaligner
  - snapaligner/align
+ - snapaligner
  files:
  - path: output/snapaligner/test.bam
- md5sum: 72f5ba2dbc015f914fddc963d9185ed6
+ md5sum: ca1c2472d7fd405edd7d8edebc7a2373
  - path: output/snapaligner/test.bam.bai
- md5sum: c97d4d0e2a00864916eaea95b039cbf9
+ md5sum: c46eb41ccbca7a9a9a8522e44c2cd490
  - path: output/snapaligner/versions.yml
 
 - name: snapaligner align test_snapaligner_paired
  command: nextflow run ./tests/modules/nf-core/snapaligner/align -entry test_snapaligner_paired -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/snapaligner/align/nextflow.config
  tags:
- - snapaligner
  - snapaligner/align
+ - snapaligner
  files:
  - path: output/snapaligner/test.bam
- md5sum: f9a98af4f70745654202de81b12faeef
+ md5sum: 7fef4ace398a5e5060ae54d4466c1503
  - path: output/snapaligner/test.bam.bai
- md5sum: cd256b73dd8bc0f351a128c0a0b2f7c5
+ md5sum: d5979aec0109084091150ceb4d87d351
  - path: output/snapaligner/versions.yml
diff --git a/tests/modules/nf-core/snapaligner/index/test.yml b/tests/modules/nf-core/snapaligner/index/test.yml
@@ -1,8 +1,8 @@
 - name: snapaligner index test_snapaligner_index
- command: nextflow run ./tests/modules/nf-core/snapaligner/index -entry test_snapaligner_index -c ./tests/config/nextflow.config
+ command: nextflow run ./tests/modules/nf-core/snapaligner/index -entry test_snapaligner_index -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/snapaligner/index/nextflow.config
  tags:
- - snapaligner/index
  - snapaligner
+ - snapaligner/index
  files:
  - path: output/snapaligner/snap/Genome
  md5sum: 7e189c954142ba37460332b467e34ed4