Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

Fast and exact gap-affine partial order alignment

Kolmogorov Arnold Networks

Biological foundation modeling from molecular to genome scale

Burn is a new comprehensive dynamic Deep Learning Framework built using Rust with extreme flexibility, compute efficiency and portability as its primary goals.

Wrapper for the macOS signpost API

🦀 A peer-reviewed collection of articles/talks/repos which teach concise, idiomatic Rust.

A pairwise sequence aligner written in Rust

Bioinformatics I/O libraries in Rust

A genome visualization python package for comparative genomics

python Circos

Python library to visualize circular plasmid maps

Tool to plot synteny and structural rearrangements between genomes

File support for asyncio

Tutorials for making 3D-looking maps with Blender and QGIS

strain-level analysis tools

WFA-lib: Wavefront alignment algorithm library v2

Performant Pythonic GenomicRanges

PRML algorithms implemented in Python

Open source code for AlphaFold.

Cello v2 is the continuation of the Cello genetic circuit design software.

Genomics Extension for SQLite

Rolling hash functions in Java

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

Official home of genome aligner based upon notion of Cactus graphs

Bioinformatics one liners from Ming Tang

This is the development home of the workflow management system Snakemake. For general information, see

Population-scale genomics