JP6357292B2 - Cnksr1を阻害するための方法及び組成物 - Google Patents
Cnksr1を阻害するための方法及び組成物 Download PDFInfo
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- JP6357292B2 JP6357292B2 JP2015548050A JP2015548050A JP6357292B2 JP 6357292 B2 JP6357292 B2 JP 6357292B2 JP 2015548050 A JP2015548050 A JP 2015548050A JP 2015548050 A JP2015548050 A JP 2015548050A JP 6357292 B2 JP6357292 B2 JP 6357292B2
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- 239000011667 zinc carbonate Substances 0.000 description 1
- 235000004416 zinc carbonate Nutrition 0.000 description 1
- 229910000010 zinc carbonate Inorganic materials 0.000 description 1
- XOOUIPVCVHRTMJ-UHFFFAOYSA-L zinc stearate Chemical compound [Zn+2].CCCCCCCCCCCCCCCCCC([O-])=O.CCCCCCCCCCCCCCCCCC([O-])=O XOOUIPVCVHRTMJ-UHFFFAOYSA-L 0.000 description 1
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- C07D409/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings
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Description
本出願は、2013年12月14日に出願された、Methods and Compositions for Inhibiting CNKSR1と題する米国特許仮出願第61/737,658号に対する優先権を主張する。
米国政府は、テキサス州CPRITのHigh Impact Grant『KRAS the elephant in the room of cancer chemotherapy』第RP100686号に従う、本発明に対する一定の権利を有しうる。
この出願の発明に関連する先行技術文献情報としては、以下のものがある(国際出願日以降国際段階で引用された文献及び他国に国内移行した際に引用された文献を含む)。
(先行技術文献)
(特許文献)
(特許文献1) 国際公開第2003/076436号
(特許文献2) 国際公開第2003/084473号
(特許文献3) 国際公開第2005/000862号
(特許文献4) 国際公開第2005/005421号
(特許文献5) 国際公開第2005/090461号
(特許文献6) 国際公開第2005/097758号
(特許文献7) 国際公開第2006/046914号
(特許文献8) 国際公開第2007/039173号
(特許文献9) 国際公開第2008/083158号
(特許文献10) 国際公開第2009/129267号
(特許文献11) 国際公開第2010/085968号
(特許文献12) 国際公開第2011/032169号
(特許文献13) 国際公開第2014/093988号
(特許文献14) 国際公開第2016/172191号
(特許文献15) 米国特許第4,939,140号明細書
(特許文献16) 米国特許第4,251,528号明細書
(特許文献17) 米国特許第6,924,284号明細書
(特許文献18) 米国特許出願公開第2011/0144066号明細書
(特許文献19) 米国特許第6,066,311号明細書
(特許文献20) 米国特許出願公開第2012/0189670号明細書
(非特許文献)
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(非特許文献17) GILLS et al."Spectrum of Activity and Molecular Correlates of Response to Phosphatidylinositol Ether Lipid Analogues, Novel Lipid−based Inhibitors of Akt"March 2006,Mol.Cancer Ther.5(3):713−722
(非特許文献18) GIRANDA et al."Novel ATP−competitive AKT Inhibitors Slow the Progression of Tumors in vivo"September 30,2004,Eur.J.Cancer Supp.2(246):76−77
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(非特許文献20) HUMPHREYS et al."Toxicity and antileukemic effectiveness of pyridine derivatives and 1,3,4−thiadiazole derivatives in mice.Relationship to nicotinamide antagonism"1962,Cancer Res.22:483−550
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(非特許文献26) KIM et al."Targeting the Phosphatidylinositol−3 Kinase/Akt Pathway for the Treatment of Cancer"December 2005,Curr.Opin.Investig.Drugs 6(12):1250−1258
(非特許文献27) KOMANDER et al."Structural Insights into the Regulation of Pdk1 by Phosphoinositides and Inositol Phosphates" 2004,EMBO J.23(20):3918−3928
(非特許文献28) KUMAR et al."AKT Crystal Structure and AKT−specific Inhibitors"November 2005,Oncogene 24(50):7493−7501
(非特許文献29) LI "Recent Progress in the Discovery of Akt Inhibitors as Anticancer Agents"2007,Expert Opin.Ther.Patents 17:1077−1130
(非特許文献30) MAHADEVAN et al. "Discovery of a novel class of AKT pleckstrin homology domain inhibitors" September 2008, Mol. Cancer Ther. 7(9):2621−2632
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(非特許文献32) MEUILLET et al."In Vivo Molecular Pharmacology and Antitumor Activity of the Targeted Akt Inhibitor PX−316"2004,Oncol.Res.14(10):513−527(abstract)
(非特許文献33) MEUILLET et al."Specific Inhibition of the Akt2 Pleckstrin Homology domain by D−3−deoxy−phosphatidyl−myo−inositol Analogues"April 2003,Mol.Cancer.Ther.2(4):390−399
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(非特許文献37) Office Action issued in Australian Application No.2009236256,mailed May 2,2013
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Rは、−C1−C4アルキル、−NO2、−NH2、−NHSO2CH3、−C1−C5シクロアルキル、もしくは−CF3であり、
R2はHであり、もしくはRとR2とがそれらに結合する炭素を伴う二環式部位を形成するために
R1は、−C(O)、−C(O)O(C1−C4アルキル)、−C(O)OH、−C1−C4アルキル−OH、−CH(OH)(CH2)nNH2、−CH(OH)、−C(OH)CNO2、−(CH2)nNO2、−CHO、−C(O)NHR3、
nは、1、2、3、もしくは4であり、
R3は、−C1−C4アルキル、−C1−C2アルキル−C(O)NH2、−S(O)2CH3であり、かつ、
RがMeの場合はR1が−C(O)OCH2CH3ではない。
R4は−Hもしくは−C1−C4アルキルであり、
R5は、−C1−C4アルキル−OH、−C2−C6アルケニル−OH、−C1−C4アルキル−C(O)−C1−C4アルキル、−C2−C6アルケニル−C(O)−C1−C4アルキル、−C1−C4アルキル−C(O)−C3−C5シクロアルキル、−−C2−C6アルケニル−C(O)−C3−C5シクロアルキル、
R8はC1−C4アルキルもしくは−C3−C5シクロアルキルであり、かつ
R7はHもしくは
R9は−Hもしくは−C1−C4アルキルであり、
R10は、−C(O)OC1−C4アルキル、−C(O)OH、
R11はHもしくはC1−C4アルキルであり、
R12はC1−C4アルキルである。
本組成物及び方法が開示される前に、本発明は、開示される特定の工程、組成物、または技法に限定されないことが理解されるべきである。工程、組成物、または技法は変化しうるためである。本開示において用いられる用語は、特定のバージョンまたは実施形態を開示する目的のみのためであって、添付の特許請求の範囲によってのみ限定されることになる本発明の範囲を限定することを意図しないこともまた、理解されるべきである。別に定義されない限り、本明細書で用いられる全ての専門及び化学的用語は、当業者によって一般的に理解されるのと同じ意味を有する。本発明の実施形態の実践または試験においては、本明細書で開示されるのと類似したまたは同等のあらゆる方法及び材料が用いられうるが、好まれる方法、装置、及び材料がここでは開示される。本明細書で言及される全ての刊行物は、その全体が本参照により組み込まれる。本明細書におけるいかなるものも、先の発明によって本発明がそのような開示に先行する権利を有さないと認めたものと解釈されるべきではない。
式中、
W及びXは、それぞれ独立に、炭素原子及び窒素原子から選択され、
Yは炭素原子であり、
Zは、メチレン、酸素原子、及び硫黄原子から選択され、
XとYと間の結合次数は、単結合または二重結合から選択され、
R1は、ヒドロキシ、チオール、任意で置換されたアミン類、任意で置換されたエーテル類、任意で置換されたスルファン類、Yとともにケトンを形成する酸素原子、Yとともにイミンを形成する任意で置換された窒素原子、及びYとともにチオンを形成する硫黄原子から選択され、
R2は、ヒドロキシ、チオール、任意で置換されたアミン類、任意で置換されたエーテル類、任意で置換されたスルファン類、1から3個の炭素原子を有する任意で置換されたアルキル鎖、任意で置換されたスルホンイミド酸類、任意で置換されたスルホンイミデートから選択され、かつ
R3は、酢酸、アセテート、酢酸アルキル、及び4−p−トリルチアゾール−2−イルから選択され、
さらにその化合物は、
式中、
W及びXは、それぞれ独立に、炭素原子及び窒素原子から選択され、
Yは炭素原子であり、
Zは、メチレン、及び硫黄原子から選択され、
XとYと間の結合次数は、単結合または二重結合から選択され、
R1は、ヒドロキシ、及びYとともにケトンを形成する酸素原子から選択され、
R2は、任意で置換された炭素原子、及び任意で置換されたスルホンイミデートから選択され、かつ
R3は、アセテート、及び4−p−トリルチアゾール−2−イルから選択され、
さらにその化合物は、
Rは、−C1−C4アルキル、−NO2、−NH2、−NHSO2CH3、−C1−C5シクロアルキル、もしくは−CF3であり、
R2はHである、もしくはRとR2とがそれらに結合する炭素を伴う二環式部位を形成するために
R1は、−C(O)、−C(O)O(C1−C4アルキル)、−C(O)OH、−CH2OH、−CH(OH)(CH2)nNH2、−CH(OH)、−C(OH)CNO2、−(CH2)nNO2、−CHO、−C(O)NHR3、
R3は、−C1−C4アルキル、−C1−C2アルキル−C(O)NH2、−S(O)2CH3であり、かつ、
RがMeの場合はR1が−C(O)OCH2CH3ではない(化合物7)。
式中、
R4は、ヒドロキシ、チオール、任意で置換されたアミン類、及び任意で置換されたエーテルから選択され、
R5は、ヒドロキシ、チオール、任意で置換されたアミン類、任意で置換されたエーテル類、任意で置換されたスルファン類、1から3個の炭素原子を有する任意で置換されたアルキル鎖、任意で置換されたスルホンイミド酸類、任意で置換されたスルホンイミデートから選択され、かつ
R3は、酢酸、アセテート、酢酸アルキル、及び4−p−トリルチアゾール−2−イルから選択される。
R4は−Hもしくは−C1−C4アルキルであり、
R5は、−C1−C4アルキル−OH、−C2−C6アルケニル−OH、−C1−C4アルキル−C(O)−C1−C4アルキル、−C2−C6アルケニル−C(O)−C1−C4アルキル、−C1−C4アルキル−C(O)−C3−C5シクロアルキル、−−C2−C6アルケニル−C(O)−C3−C5シクロアルキル、
R8はC1−C4アルキルもしくは−C3−C5シクロアルキルであり、かつ
R7はHもしくは
式中、
R4は、ヒドロキシ、チオール、任意で置換されたアミン類、及び任意で置換されたエーテルから選択され、
R5は、ヒドロキシ、チオール、任意で置換されたアミン類、任意で置換されたエーテル類、任意で置換されたスルファン類、1から3個の炭素原子を有する任意で置換されたアルキル鎖、任意で置換されたスルホンイミド酸類、任意で置換されたスルホンイミデートから選択され、かつ
R6は、酢酸、アセテート、酢酸アルキル、チアゾール−2−イル、及び4−p−トリルチアゾール−2−イルから選択される。1つの好まれる実施形態においては、R4は、ヒドロキシ、及び任意で置換されたエーテルから選択され、R5は1から3個の炭素原子を有する置換されたアルキル鎖であり、かつR6はチアゾール−2−イルである。
R9は−Hもしくは−C1−C4アルキル−CH3であり、
R10は、−C(O)OC1−C4アルキル[エチル]、−C(O)OH、
R11はHもしくはC1−C4アルキルであり、
R12はC1−C4アルキルである。
アイソジェニック変異型KRAS株に対する化合物のスクリーニング(図2)。
MiaPaCa−2及びM27は、マイコプラズマ確認がなされ、10%FBSを有するDMEM中で維持された。最適化は、社内において、社内の最適化法を使用して行われた。それから、ゲノムワイドのsiRNAライブラリー(Dharmacon)を用いて並列スクリーニングが行われた。
プレートが最善の細胞密度に最適化され、それはmLあたり20,000細胞と分かった。96ウェルGreinerプレートから蓋を取り除き、逆さまにした。次に、mLあたり20,000細胞の懸濁液20μLが、小さな液滴を形成しながら、96ウェルプレートの蓋上の円の中心へと直接加えられた。培養液100μLが対応するウェル中に加えられて液滴の温度を維持するのに用いられ、液滴を乱すことなく注意深く蓋をひっくり返してプレート上へと戻した。それからプレートをインキュベーターに3日間入れ、重力により細胞を液滴の底へと移動させた。3日後、培養液400μlがSCIVAX96ウェルプレートの対応するウェルに加えられた。Greiner96ウェルプレートの蓋を取り除いてSCIVAXプレート上に乗せ、液滴が培養液に接触するようにし、インキュベーターへ戻した。1時間後、スフェロイドを乱さずに注意深く対応するウェルから培養液200μLを取り除き、画像化した。
HEK293T細胞をCNKと野生型またはG12D変異型KRASのいずれかとで共トランスフェクションした。トランスフェクションから24時間後、細胞をカバーガラス上に播種し、さらに24時間成長させ、それから一晩血清を欠乏させた。細胞を4(w/v)パラホルムアルデヒドpH8.0で20分かけて室温にて固定させた。PBS(pH8.0)で6−7回濯いだ後、カバーガラスを封入剤(pH7.5−8.0、PBS中0.1%p−フェニレンジアミン/75%グリセロール)を用いてスライドグラス上にマウントした。Leica SP5共焦点顕微鏡システムを用いて、63X油浸対物レンズ(開口数NA=1.4)、ライン走査速度600Hz、画像サイズ1024x1024ピクセルで、共焦点レーザー走査顕微鏡法が行われた。GFPは488nmに調節されたアルゴン可視光レーザーで励起し、mRFPは543nmに調節されたクリプトンレーザーで励起した。GFP及びRFP蛍光放出は、それぞれ510/10nm及び595/10nmバンド選択により、光電子倍増管を用いて収集された。
TCSPC(時間相関単一光子計数法)のための内蔵型光電子倍増管(PMT)検出器を有するLeica TCP SP5倒立型高解像度共焦点顕微鏡システムを用いて、FLIM実験を行った。調節可能なフェムト秒(fs)チタンサファイアレーザーを用いて、80MHzの繰り返し速度及び80fsより小さいパルス幅(Spectral Physics、Mai Tai BB)で、試料を励起した。二光子励起に用いられた波長は930nmで、525±25nm干渉フィルタにより蛍光を検出した。油浸対物レンズ(開口数NA=1.4)を用いて、ライン走査速度400Hz、画像サイズ512x512ピクセルで、画像を獲得した。FLIM解析に対しては、ピクセル数を256x256へと減少させた。TCSPC用のBecker&Hickl SPC830データ及び画像獲得カードを用いて、FLIMデータを収集した。蛍光減衰をBecker and HicklのSPCImageソフトウェアを用いで単一指数減衰モデルに当てはめ、GFP蛍光寿命を疑似彩色マップに表示させた。
全ての相互作用解析は、Biacore T100 Control Software v3.2、及びBIAevaluation v4.1解析ソフトウェア(Biacore)を用いて行われた。PHドメインHis融合タンパク質(CNK1及びAKT1)を発現させ、10,000応答単位またはそれより低いレベルでNTAチップ上に固定させた。濃度範囲50μMから0.010μMの小分子分析物を、高流速(30μL/分)で注入した。全ての試料及びランニング緩衝液におけるDMSO濃度は、1−5%(v/v)(30μL/分)であった。全ての試料及びランニング緩衝液におけるDMSO濃度は、1−5%(v/v)であった。
細胞を、氷冷PBSと、50mmol/L HEPES(pH7.5)、50mmol/L NaCl、0.2mmol/L NaF、0.2mmol/Lオルトバナジウム酸ナトリウム、1mmol/Lフェニルメチルスルホニルフロリド、20μg/mLアプロチニン、20μg/mLロイペプチン、1%NP40、及び0.25%デオキシコール酸ナトリウムを含有する溶解バッファーとを用いて、2回洗った。タンパク質濃度をビシンコニン酸分析(Pierce Biotechnology)により決定し、細胞溶解タンパク質50μgを、0.25mol/L Tris(pH6.8)、35%グリセロール、8%SDS、及び10%2−メルカプトエタノールを含有する変性バッファーを用いて5分間煮て、10%アクリルアミド/ビスアクリルアミドゲル上にロードし、電気泳動により150Vにて40分かけて分離した。タンパク質を電気泳動によりニトロセルロース膜に転写し、137mmol/L NaCl、2.7mmol/L KCl、897mmol/L CaCl2、491mmol/L MgCl2、3.4mmol/L Na2HPO4、593mmol/L KH2PO4、及び5%ウシ血清アルブミンのブロッキングバッファーと共に予め放置しておき、それから、抗リン酸化Thr308−Akt、Ser473Akt、抗CRaf Ser338 Mapk Thr202/Tyr204、p70 S6K Thr389、または抗Akt.(Cell Signaling 1:1000)、抗CNKSR1(Signal Transduction labs)抗ラミンA/C、及び抗β−アクチンと共に一晩放置した(検出には、Santa Cruz Biotechnology 1:2000 ロバ抗ウサキIgGペルオキシダーゼ共役型二次抗体(GE Healthcare)を使用した)。活性Ra1A及びRa1Bの測定には、Ra1及びRa1B活性化キットを使用した(Biorad)。Kodak X−Omat Blue MLフィルム(Eastman Kodak)上でRenaissance化学発光システムを使用して、バンド密度を測定した。
Claims (35)
- 式IAの化合物、またはそれらの薬学的に許容可能な塩であって、
Rが、−C1−C4アルキル、−NO2、−NH2、−NHSO2CH3、−C 3 −C5シクロアルキル、もしくは−CF3であり、
R2がHであり、またはR及びR2が
R1が、−C(O)O(C1−C4アルキル)、−C(O)OH、−C1−C4アルキル−OH、−CH(OH)(CH2)nNH2、−CH 2 (OH)、−CH(OH)CH 2 NO 2 、−(CH2)nNO2、−CHO、−C(O)NHR3、
nは、1、2、3、もしくは4であり、
R3は、−C1−C4アルキル、−C1−C2アルキル−C(O)NH2、もしくは−S(O)2CH3であり、
RがNO 2 、CF 3 、およびMeから選択される場合はR1が−C(O)OCH2CH3ではない、
化合物、またはそれらの薬学的に許容可能な塩。 - 請求項1記載の化合物において、R1が−C(O)O(C1−C4アルキル)である、化合物。
- 請求項1記載の化合物において、R1が−−C1−C4アルキル−OHである、化合物。
- 請求項1記載の化合物において、R1が−C(O)NHR3である、化合物。
- 請求項1記載の化合物において、Rがメチルである、化合物。
- 請求項1記載の化合物において、Rが−C 3 −C5シクロアルキルである、化合物。
- 請求項10記載の化合物において、R 4 がメチルである、化合物。
- 請求項10記載の化合物において、R 5 が−C2−C6アルケニル−OHもしくは−C2−C6アルケニル−C(O)−C1−C4アルキルである、化合物。
- 請求項14記載の化合物において、R 8 がシクロプロピルもしくはシクロブチルである、化合物。
- 請求項10記載の化合物において、R 7 がHである、化合物。
- 請求項20記載の化合物において、R 9 がメチルである、化合物。
- 請求項20記載の化合物において、R 10 が−C(O)OC1−C4アルキルである、
化合物。 - 請求項22記載の化合物において、C 1 −C 4 アルキルがエチルである、化合物。
- 請求項28記載の化合物において、R13がメチルである、化合物。
- 請求項28記載の化合物において、R14がO−メチルである、化合物。
- 癌を治療するための組成物であって、有効量の請求項1〜31記載の化合物を有する、組成物。
- 請求項32記載の組成物において、前記癌が、副腎皮質癌腫、肛門癌、膀胱癌、脳腫瘍、乳癌、カルチノイド腫瘍、胃腸癌、原発腫瘍が不明の癌腫、子宮頸癌、結腸癌、子宮内膜癌、食道癌、肝外胆管癌、ユーイング腫瘍(PNET)、頭蓋外胚細胞腫瘍、眼の癌、眼内黒色腫、胆嚢癌、胃癌(胃)、胚細胞腫瘍、性腺外腫瘍、妊娠性絨毛腫瘍、頭頸部癌、下咽頭癌、島細胞癌腫、腎臓癌、喉頭癌、白血病、成人急性リンパ芽球性白血病、小児急性リンパ芽球性白血病、舌及び口腔癌、肝臓癌、肺癌、リンパ腫、AIDS関連リンパ腫、中枢神経系(原発)リンパ腫、皮膚T細胞リンパ腫、ホジキン病、成人リンパ腫、ホジキン病、小児リンパ腫、非ホジキン病、成人リンパ腫、非ホジキン病、小児、悪性中皮腫、黒色腫、メルケル細胞癌腫、原発腫瘍不明の転移性扁平頸部癌、多発性骨髄腫及び他の形質細胞腫瘍、菌状息肉症、骨髄異形成症候群、骨髄増殖性障害、上咽頭癌、神経芽細胞種、口腔癌、中咽頭癌、骨肉腫、上皮性卵巣癌、卵巣胚細胞腫瘍、膵臓癌、外分泌系膵臓癌、島細胞癌腫、副鼻腔及び鼻腔癌、副甲状腺癌、陰茎癌、脳下垂体癌、形質細胞腫瘍、前立腺癌、横紋筋肉腫、小児、直腸癌、腎細胞癌、腎盂尿管癌、移行上皮癌、唾液腺癌、セザリー症候群、皮膚癌、皮膚癌、皮膚T細胞リンパ腫、皮膚癌、カポジ肉腫、皮膚癌、黒色腫、小腸癌、軟部肉腫、成人軟部肉腫、小児、胃癌、精巣癌、胸腺腫、悪性、甲状腺癌、尿道癌、子宮癌、肉腫、稀な小児癌、膣癌、外陰癌、ウィルムス腫瘍、並びにこれらの組み合わせから選択されるものである、組成物。
- CNKSR1を阻害するための組成物であって、有効量の請求項1〜31記載の化合物を有する、組成物。
- 請求項10記載の化合物において、R 5 が−C 1 −C 4 アルキル−OHまたは−C 1 −C 4 アルキル−C(O)−C 1 −C 4 アルキルである、化合物。
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