EP3519096A4 - Systèmes, kits, appareil et procédés à haute résolution pour détermination de relation communautaire bactérienne et autres applications de microbiologie à haut débit - Google Patents

Systèmes, kits, appareil et procédés à haute résolution pour détermination de relation communautaire bactérienne et autres applications de microbiologie à haut débit Download PDF

Info

Publication number: EP3519096A4
Authority: EP; European Patent Office
Prior art keywords: kits; methods; relationship determination; bacterial community; high resolution
Prior art date: 2016-09-28
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.): Withdrawn

Application number

EP17857449.7A

Other languages

German (de)

English (en)

Other versions

EP3519096A1 (fr

Inventor

Peter CHRISTEY

Alexander Hallock

Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)

Isolation Bio Inc

Original Assignee

General Automation Lab Technologies Inc

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

2016-09-28

Filing date

2017-09-28

Publication date

2020-06-17

2017-09-28 Application filed by General Automation Lab Technologies Inc filed Critical General Automation Lab Technologies Inc

2019-08-07 Publication of EP3519096A1 publication Critical patent/EP3519096A1/fr

2020-06-17 Publication of EP3519096A4 publication Critical patent/EP3519096A4/fr

Status Withdrawn legal-status Critical Current

Links

Classifications

- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/02—Burettes; Pipettes
- B01L3/0241—Drop counters; Drop formers
- B01L3/0244—Drop counters; Drop formers using pins
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/508—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above
- B01L3/5085—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above for multiple samples, e.g. microtitration plates
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/54—Labware with identification means
- B01L3/545—Labware with identification means for laboratory containers
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00277—Apparatus
- B01J2219/00279—Features relating to reactor vessels
- B01J2219/00306—Reactor vessels in a multiple arrangement
- B01J2219/00313—Reactor vessels in a multiple arrangement the reactor vessels being formed by arrays of wells in blocks
- B01J2219/00315—Microtiter plates
- B01J2219/00317—Microwell devices, i.e. having large numbers of wells
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00718—Type of compounds synthesised
- B01J2219/0072—Organic compounds
- B01J2219/0074—Biological products
- B01J2219/00743—Cells
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/02—Adapting objects or devices to another
- B01L2200/025—Align devices or objects to ensure defined positions relative to each other
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/06—Fluid handling related problems
- B01L2200/0689—Sealing
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/12—Specific details about manufacturing devices
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/14—Process control and prevention of errors
- B01L2200/141—Preventing contamination, tampering
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/02—Identification, exchange or storage of information
- B01L2300/021—Identification, e.g. bar codes
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/06—Auxiliary integrated devices, integrated components
- B01L2300/0627—Sensor or part of a sensor is integrated
- B01L2300/0636—Integrated biosensor, microarrays
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/06—Auxiliary integrated devices, integrated components
- B01L2300/0681—Filter
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0809—Geometry, shape and general structure rectangular shaped
- B01L2300/0829—Multi-well plates; Microtitration plates
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0893—Geometry, shape and general structure having a very large number of wells, microfabricated wells
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/16—Surface properties and coatings
- B01L2300/161—Control and use of surface tension forces, e.g. hydrophobic, hydrophilic
- B01L2300/165—Specific details about hydrophobic, oleophobic surfaces
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L7/00—Heating or cooling apparatus; Heat insulating devices
- B01L7/52—Heating or cooling apparatus; Heat insulating devices with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B20/00—Methods specially adapted for identifying library members
- C40B20/02—Identifying library members by their fixed physical location on a support or substrate

Landscapes

Chemical & Material Sciences (AREA)
Life Sciences & Earth Sciences (AREA)
Health & Medical Sciences (AREA)
Organic Chemistry (AREA)
Proteomics, Peptides & Aminoacids (AREA)
Analytical Chemistry (AREA)
Zoology (AREA)
Wood Science & Technology (AREA)
Engineering & Computer Science (AREA)
General Health & Medical Sciences (AREA)
Chemical Kinetics & Catalysis (AREA)
Clinical Laboratory Science (AREA)
Biotechnology (AREA)
Immunology (AREA)
Microbiology (AREA)
Molecular Biology (AREA)
Physics & Mathematics (AREA)
Biophysics (AREA)
Genetics & Genomics (AREA)
Biochemistry (AREA)
Bioinformatics & Cheminformatics (AREA)
General Engineering & Computer Science (AREA)
Hematology (AREA)
Apparatus Associated With Microorganisms And Enzymes (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

EP17857449.7A 2016-09-28 2017-09-28 Systèmes, kits, appareil et procédés à haute résolution pour détermination de relation communautaire bactérienne et autres applications de microbiologie à haut débit Withdrawn EP3519096A4 (fr)

Applications Claiming Priority (2)

Application Number	Priority Date	Filing Date	Title
US201662400841P	2016-09-28	2016-09-28
PCT/US2017/054108 WO2018064385A1 (fr)	2016-09-28	2017-09-28	Systèmes, kits, appareil et procédés à haute résolution pour détermination de relation communautaire bactérienne et autres applications de microbiologie à haut débit

Publications (2)

Publication Number	Publication Date
EP3519096A1 EP3519096A1 (fr)	2019-08-07
EP3519096A4 true EP3519096A4 (fr)	2020-06-17

Family

ID=61760120

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
EP17857449.7A Withdrawn EP3519096A4 (fr)	2016-09-28	2017-09-28	Systèmes, kits, appareil et procédés à haute résolution pour détermination de relation communautaire bactérienne et autres applications de microbiologie à haut débit

Country Status (7)

Country	Link
EP (1)	EP3519096A4 (fr)
JP (1)	JP2019531730A (fr)
CN (1)	CN109843435A (fr)
AU (1)	AU2017335897A1 (fr)
CA (1)	CA3037631A1 (fr)
IL (1)	IL265540A (fr)
WO (1)	WO2018064385A1 (fr)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
CN111483096B (zh) *	2019-12-10	2022-04-08	中国科学院亚热带农业生态研究所	根际通道微流控芯片及其胶体块和一种制造胶体块的模具
CN115867676A (zh) *	2020-05-29	2023-03-28	国立研究开发法人理化学研究所	细胞群的处理方法和细胞群中所含的基因的分析方法
EP3939699A1 (fr) *	2020-07-17	2022-01-19	Biomillenia SAS	Modulateur de croissance
WO2024135694A1 (fr) *	2022-12-23	2024-06-27	ペプチドリーム株式会社	Procédé d'amplification d'adn à l'aide d'une pcr

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WO2005010169A2 (fr) *	2003-07-23	2005-02-03	Diversa Corporation	Criblage a haut rendement ou sur la base de capillaires pour bioactivite ou biomolecule
EP2805769A1 (fr) *	2013-05-24	2014-11-26	European Molecular Biology Laboratory	Procédés d'analyse de cellule unique à l'échelle nanométrique
US20160010085A1 (en) *	2013-03-07	2016-01-14	Snu R&Db Foundation	Heterologous dna barcoding method
WO2016138496A1 (fr) *	2015-02-27	2016-09-01	Cellular Research, Inc.	Codage à barres moléculaire à adressage spatial

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US20050014155A1 (en) *	2001-11-16	2005-01-20	Xu Wilson C	High-density cell microarrays for parallel functional determinations
CN1313622C (zh) *	2002-08-02	2007-05-02	赵翀	高通量细胞生物芯片检测技术及试剂盒
CN1444043A (zh) *	2002-12-25	2003-09-24	帕弗瑞生物技术(北京)有限公司	一种个体化特异性免疫细胞功能测定方法
WO2005090549A1 (fr) *	2004-03-19	2005-09-29	Genomidea Inc.	Micropuits pour culture cellulaire
CN1920559A (zh) *	2005-08-24	2007-02-28	赵翀	一种细胞生物技术、试剂盒及制备装置
PT2007910T (pt) *	2006-03-31	2016-12-30	Mobidiag Oy	Método e microchip para a detecção dos vírus do herpes
KR102642680B1 (ko) *	2013-06-27	2024-03-04	10엑스 제노믹스, 인크.	샘플 처리를 위한 조성물 및 방법
WO2015013214A2 (fr) *	2013-07-21	2015-01-29	Whole Biome, Inc.	Procédés et systèmes de caractérisation, de surveillance et de traitement du microbiome
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AU2015209718B2 (en) *	2014-01-25	2021-03-25	Macrogen Inc.	Method and system for microbiome analysis
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JP6837473B2 (ja) *	2015-04-21	2021-03-03	ジェネラルオートメーションラボテクノロジーズインコーポレイテッド	ハイスループット微生物学適用高分解能システム、キット、装置、並びに方法

2017
- 2017-09-28 EP EP17857449.7A patent/EP3519096A4/fr not_active Withdrawn
- 2017-09-28 CA CA3037631A patent/CA3037631A1/fr not_active Abandoned
- 2017-09-28 JP JP2019516965A patent/JP2019531730A/ja active Pending
- 2017-09-28 AU AU2017335897A patent/AU2017335897A1/en not_active Abandoned
- 2017-09-28 CN CN201780059848.3A patent/CN109843435A/zh active Pending
- 2017-09-28 WO PCT/US2017/054108 patent/WO2018064385A1/fr unknown
2019
- 2019-03-21 IL IL265540A patent/IL265540A/en unknown

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
WO2005010169A2 (fr) *	2003-07-23	2005-02-03	Diversa Corporation	Criblage a haut rendement ou sur la base de capillaires pour bioactivite ou biomolecule
US20160010085A1 (en) *	2013-03-07	2016-01-14	Snu R&Db Foundation	Heterologous dna barcoding method
EP2805769A1 (fr) *	2013-05-24	2014-11-26	European Molecular Biology Laboratory	Procédés d'analyse de cellule unique à l'échelle nanométrique
WO2016138496A1 (fr) *	2015-02-27	2016-09-01	Cellular Research, Inc.	Codage à barres moléculaire à adressage spatial

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Title
J.DAISY VANITHA ET AL: "Evaluation of microplate Alamar blue assay for drug susceptibility testing of Mycobacterium avium complex isolates", DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, vol. 49, no. 3, 1 July 2004 (2004-07-01), AMSTERDAM, NL, pages 179 - 182, XP055288738, ISSN: 0732-8893, DOI: 10.1016/j.diagmicrobio.2004.04.003 *
LIANG MA ET AL: "Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, vol. 111, no. 27, 25 June 2014 (2014-06-25), US, pages 9768 - 9773, XP055362053, ISSN: 0027-8424, DOI: 10.1073/pnas.1404753111 *
See also references of WO2018064385A1 *

Also Published As

Publication number	Publication date
CN109843435A (zh)	2019-06-04
WO2018064385A1 (fr)	2018-04-05
CA3037631A1 (fr)	2018-04-05
JP2019531730A (ja)	2019-11-07
IL265540A (en)	2019-05-30
AU2017335897A1 (en)	2019-04-04
EP3519096A1 (fr)	2019-08-07

Legal Events

Date	Code	Title	Description
2018-04-07	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE
2019-07-05	PUAI	Public reference made under article 153(3) epc to a published international application that has entered the european phase	Free format text: ORIGINAL CODE: 0009012
2019-07-05	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE
2019-08-07	17P	Request for examination filed	Effective date: 20190426
2019-08-07	AK	Designated contracting states	Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR
2019-08-07	AX	Request for extension of the european patent	Extension state: BA ME
2020-01-01	DAV	Request for validation of the european patent (deleted)
2020-01-01	DAX	Request for extension of the european patent (deleted)
2020-02-26	RIN1	Information on inventor provided before grant (corrected)	Inventor name: HALLOCK, ALEXANDER Inventor name: CHRISTEY, PETER
2020-06-17	A4	Supplementary search report drawn up and despatched	Effective date: 20200514
2020-06-17	RIC1	Information provided on ipc code assigned before grant	Ipc: C12Q 1/689 20180101ALI20200508BHEP Ipc: B01L 3/00 20060101ALI20200508BHEP Ipc: B01L 7/00 20060101ALI20200508BHEP Ipc: C40B 60/14 20060101ALI20200508BHEP Ipc: C40B 20/02 20060101ALI20200508BHEP Ipc: C12Q 1/6869 20180101ALI20200508BHEP Ipc: C12Q 1/6837 20180101ALI20200508BHEP Ipc: B01L 3/02 20060101AFI20200508BHEP
2022-01-21	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: EXAMINATION IS IN PROGRESS
2022-02-23	17Q	First examination report despatched	Effective date: 20220125
2022-03-11	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE APPLICATION HAS BEEN WITHDRAWN
2022-04-13	18W	Application withdrawn	Effective date: 20220307

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