biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute

GFA visualizer, GPU-accelerated using Vulkan

A script to make Jsons with Alphafold3

An R package to identify and classify duplicated genes from whole-genome protein sequence data

Make colorful identity heatmaps of genomic sequence

A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular Evolution (Yang 2006) and Molecular Evolution: A Statistica…

Map genetic variants and protein positions to protein interfaces in 3D

Tool for plotting sequencing data along genomic coordinates.

An HLA star-calling tool for PacBio HiFi data types

Another Gtf/Gff Analysis Toolkit

PGR-TK: Pangenome Research Tool Kit

a short-read polishing tool for long-read assemblies

A complete diploid human genome

Interactive multiscale visualization for structural variation in human genomes

snakemake pipeline for creating trees from sequence sets

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

A tool for somatic structural variant calling using long reads

Annotation and Ranking of Structural Variation

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Structural variant benchmark using PacBio HiFi reads

A genome visualization python package for comparative genomics

Copy number caller for long read data including SNV utilization

Assembled Genomes Compressor

Interactive phylogenetic tree viewer/editor

an interactive web viewer for reference pangenome graphs

Gene cluster comparison figure generator