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Map genetic variants and protein positions to protein interfaces in 3D

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vicruiser/3Dmapper

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Overview

3Dmapper is a command line tool based on R and Python programming languages that maps annotated genomic variants or positions to protein structures.

Dependencies

  • BLAST standalone software version >= 2.6. Follow these instructions to download and use the command line tool.
  • Python > 3.6
  • R version > 3.5
  • GNU parallel

Quick install

Execute the following code in Terminal:

git clone https://github.com/vicruiser/3Dmapper.git
cd 3Dmapper
pip install . 
sh r_dependencies.sh

Tutorial

To learn how to use 3Dmapper, please refer to our Wiki.