Conversion between scRNA-seq objects

Power calculations for Mendelian Randomisation

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

Clone of the Bioconductor repository for the scRNAseq package.

scINRB: single-cell gene expression imputation with network regularization and bulk RNA-seq data

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

Access and Format Single-cell RNA-seq Datasets from Public Resources

A LogAnalyzer app for checking logs in Posit Connect

Mastering Shiny: a book

SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.

Cell identification in high-resolution Spatial Transcriptomics

STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

Predict RNA velocity through deep learning

Single-cell analysis in Python. Scales to >1M cells.

A tool for removing doublets from single-cell RNA-seq data

A plugin for reading and annotating PDFs and EPUBs in obsidian.

A deep learning-based tool to identify splice variants

Metagenomic classification of long-read sequencing data

This repository contains the code used in the study presented in the paper "Merging Microarray Studies and Using Random Forest to Identify a Common Gene Expression Signature in Heart Disease"

LLM inference in C/C++

Analysis code to reproduce all figures of "A Comprehensive Atlas of Perineuronal Net Distribution and Colocalization with Parvalbumin in the Adult Mouse Brain"