Stars
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
Clone of the Bioconductor repository for the scRNAseq package.
scINRB: single-cell gene expression imputation with network regularization and bulk RNA-seq data
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
Access and Format Single-cell RNA-seq Datasets from Public Resources
A LogAnalyzer app for checking logs in Posit Connect
wanglabtongji / SCRIP
Forked from xindong95/SCRIPSCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
wanglabtongji / Cellist
Forked from DongqingSun96/CellistCell identification in high-resolution Spatial Transcriptomics
wanglabtongji / STRIDE
Forked from DongqingSun96/STRIDESTRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
Predict RNA velocity through deep learning
Single-cell analysis in Python. Scales to >1M cells.
wong-ziyi / DoubletDecon
Forked from EDePasquale/DoubletDeconA tool for removing doublets from single-cell RNA-seq data
A plugin for reading and annotating PDFs and EPUBs in obsidian.
A deep learning-based tool to identify splice variants
Metagenomic classification of long-read sequencing data
This repository contains the code used in the study presented in the paper "Merging Microarray Studies and Using Random Forest to Identify a Common Gene Expression Signature in Heart Disease"