AQM updates (Was #1383) + Update to use .lua modulefiles (#1376)

[BrianCurtis-NOAA]

PR Checklist

• This PR is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR. Please consult the ufs-weather-model wiki if you are unsure how to do this.

• This PR has been tested using a branch which is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR

• An Issue describing the work contained in this PR has been created either in the subcomponent(s) or in the ufs-weather-model. The Issue should be created in the repository that is most relevant to the changes in contained in the PR. The Issue and the dependent sub-component PR
  are specified below.

• Results for one or more of the regression tests change and the reasons for the changes are understood and explained below.

• New or updated input data is required by this PR. If checked, please work with the code managers to update input data sets on all platforms.

Description

This PR introduces the following updates relevant to the coupled UFS-AQM configuration (Online-CMAQ):

• Rectify CCPP formulation of surface net heat fluxes provided to the coupled AQM component
• Update AQM component to restore link to the EPA authoritative CMAQ repository
• Use proper number of non-advected tracers and convective scavenging coefficients in regional_atmaq regression test

These updates will change the baseline for regional_atmaq.

Issue(s) addressed

• fixes Surface upward heat fluxes for coupling are not properly calculated when (cplaqm .and. .not.cplflx) is ture in GFS_PBL_generic_post.F90 NCAR/ccpp-physics#945
• fixes Bring CMAQ fork changes for MODULE_MOD into AQM repo. NOAA-EMC/AQM#7
• fixes Incorrect number of non-advected tracers in regional_atmaq regression test #1382
• closes AQM updates #1383
• closes Convert modulefiles to .lua format on WCOSS2, acorn, hera, jet, orion, cheyenne #1376

Testing

• hera.intel
• hera.gnu
• orion.intel
• cheyenne.intel
• cheyenne.gnu
• gaea.intel
• jet.intel
• wcoss2.intel
• acorn.intel
• opnReqTest for newly added/changed feature
• CI

Dependencies

• waiting on Update surface net heat fluxes for AQM coupling (was #575) NOAA-EMC/fv3atm#578
• waiting on Update surface net heat fluxes for AQM coupling (Was #953) NCAR/ccpp-physics#962
• waiting on Restore link to CMAQ authoritative repository NOAA-EMC/AQM#8

[jkbk2004]

/scratch2/NCEPDEV/marine/Jong.Kim/UFS-RT/rt-1399-intel/modulefiles/ufs_common.lua:
[string "help([[..."]:5: malformed number near '2.0.25'

[BrianCurtis-NOAA]

/scratch2/NCEPDEV/marine/Jong.Kim/UFS-RT/rt-1399-intel/modulefiles/ufs_common.lua: [string "help([[..."]:5: malformed number near '2.0.25'
Thanks, fixed.

[BrianCurtis-NOAA]

On orion, only the AQM test fails as planned.

[jkbk2004]

@BrianCurtis-NOAA all sounds good. Let go ahead to merge in dependencies. I am moving to ccpp.

[jkbk2004]

@BrianCurtis-NOAA fv3 pr merged in. Once pointers are updated here, we can merge in.

[BrianCurtis-NOAA]

@jkbk2004 done.