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Add support for cmake build system. #11

Merged
merged 17 commits into from
Dec 5, 2019
Merged

Add support for cmake build system. #11

merged 17 commits into from
Dec 5, 2019

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DusanJovic-NOAA
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climbfuji
climbfuji reviewed Nov 25, 2019
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Looks great, a lot of work. I suppose I will be doing the macos and cheyenne parts after this PR has been merged?

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else()
message("REPRO is disabled")
endif()

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I would also add a mechanism to either abort if both REPRO and DEBUG are requested, or make one of the two superior (I suggest DEBUG). In the latter case, issue a warning that both REPRO and DEBUG where requested, and that DEBUG will be used (and REPRO disabled).

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@climbfuji
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@DusanJovic-NOAA just a quick question - seems like my original modifications of your cmake_rt branches are not included. Can you confirm?

@DusanJovic-NOAA
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@DusanJovic-NOAA just a quick question - seems like my original modifications of your cmake_rt branches are not included. Can you confirm?

Which modifications? Please remind me.

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@DusanJovic-NOAA just a quick question - seems like my original modifications of your cmake_rt branches are not included. Can you confirm?

Which modifications? Please remind me.

I originally pushed them to gerrit/cmake_rt_gnu_and_ccpp (for NEMSfv3gfs, FV3), and same branches in the GitHub based repositories. But never mind, I got them back in already. Will create a PR later to update your branches.

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The cime developers at NCAR need this PR merged in order to continue our process of cime integration for the release. Please note that you do not need any further work for cheyenne build, we will take care of that.

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The cime developers at NCAR need this PR merged in order to continue our process of cime integration for the release. Please note that you do not need any further work for cheyenne build, we will take care of that.

We plan to merge this PR by the end of this week.

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This is all good to go from my end.

junwang-noaa
junwang-noaa approved these changes Dec 5, 2019
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The code changes look good to me.

@DusanJovic-NOAA DusanJovic-NOAA merged commit ad47b1d into ufs-community:ufs_public_release Dec 5, 2019
climbfuji referenced this pull request in climbfuji/ufs-weather-model Dec 16, 2019
@climbfuji
Merge pull request #11 from climbfuji/update_dtc_develop_from_emc_dev…
bf05b97 
…elop_and_collect_updates_20191205

Update dtc/develop from EMC develop and collect updates 2019/12/05
@DusanJovic-NOAA DusanJovic-NOAA deleted the ufs_public_release branch December 19, 2019 13:59
climbfuji referenced this pull request in climbfuji/ufs-weather-model Mar 17, 2020
@DomHeinzeller
Merge pull request #11 from climbfuji/gsd-dev-clouds_thompson-no-aero…
badba27 
…_dom

Update for "Changes in cloud/radiation interaction in GSD physics suite", non-aerosol-aware Thompson MP tests
climbfuji referenced this pull request in climbfuji/ufs-weather-model Apr 14, 2020
@climbfuji
Merge NCAR:dtc/develop into ufs-community:develop
e7a7f23 
- for macOS with LLVM clang, turn off OpenMP (from UFS public release)
- switch to Intel 18 on wcoss_cray
- new regression tests with RRTMGP using current control as basis

Squashed commit of the following:

commit 528c789415d6433530ed5d7867a0054cba3981ae
Merge: e447123 1e400e4
Author: Dom Heinzeller <[email protected]>
Date:   Tue Apr 14 07:03:41 2020 -0600

    Merge pull request #40 from climbfuji/update_dtc_develop_from_emc_develop_and_missing_ccnin_updates

    Update NCAR dtc/develop from EMC master, apply missing updates from CCN/IN commit

commit 1e400e40b5868d894bcb66aefdfdc5507eedf988
Author: Dom Heinzeller <[email protected]>
Date:   Tue Apr 14 07:00:12 2020 -0600

    Revert change to .gitmodules and update submodule pointer for fv3atm

commit ebb041a336f9b7dfbb6d9b13913305edf76b7131
Author: Dom Heinzeller <[email protected]>
Date:   Mon Apr 13 14:50:26 2020 -0600

    Fix typo in tests/rt_ccpp_dtc.conf

commit 6c0f94617d91a33375cddb3f20aa808bbab11dc1
Author: Dom Heinzeller <[email protected]>
Date:   Mon Apr 13 08:45:52 2020 -0600

    tests/rt_ccpp_dtc.conf: remove move tests that are already covered in tests/rt.conf

commit 246c251fb9366001c8bde0d9332e6c7e7141c6f0
Merge: 87876b1 7c3cdca
Author: Dom Heinzeller <[email protected]>
Date:   Sat Apr 11 06:18:32 2020 -0600

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into update_dtc_develop_from_emc_develop_and_missing_ccnin_updates

commit 87876b15c3977fa624d90331db5effe8d6746d98
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 10 14:24:02 2020 -0600

    Update .gitmodules and submodule pointer for fv3atm for code review and testing

commit e4471237aa8e62420daa30ce031e706953c4cbf6
Merge: fa94ff7 6897b78
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 10 11:39:04 2020 -0600

    Merge pull request #38 from climbfuji/update_dtc_develop_from_emc_develop_and_other_updates_20200409

    Update dtc/develop from develop and other updates 2020/04/09

commit 6897b78788837f6e9fab200f14965889397d6549
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 10 11:36:59 2020 -0600

    Revert change to .gitmodules and update submodule pointers for fv3atm

commit 53b8c994c3ecdb33a4b90159fc0bb16d641fd369
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:28:45 2020 -0600

    Update .gitmodules and submodule pointer for FV3 for code review and testing

commit e38adebd16f0c342c155456ce7c7d3af551e9820
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:28:17 2020 -0600

    CMakeLists.txt: require CMake 3.0

commit fb9f7511749290ecc47acd96bfd1033ae76e9a97
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:27:48 2020 -0600

    tests/rt.sh: align directory structure on Cheyenne with Hera, update date tag of regression test baseline

commit a91446ca83b1f69bde1ae0ade3d3961603e2cded
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:27:17 2020 -0600

    tests/rt_gnu.conf: compile on all platforms, not just on cheyenne (but don't run anywhere else yet)

commit af7042e26978255bd224577c6d93b99fcab3b3f9
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:26:33 2020 -0600

    tests/fv3_conf/ccpp_control_run.IN: change name of input data for RRTMGP tests

commit 11f6d44c1f9edd30ade6826b968d8d9ce9e2ac8e
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:25:55 2020 -0600

    cmake/configure_macosx.gnu.cmake: turn OpenMP off for LLVM clang compilers

commit d248227e78ae9e13006e1c88f3301d4d61fd1f8f
Merge: dc3590f ed314ae
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 11:05:05 2020 -0600

    Merge branch 'wcoss_cray_intel18' of https://github.com/DusanJovic-NOAA/ufs-weather-model into update_dtc_develop_from_emc_develop_and_other_updates_20200409

commit dc3590fd48463e4be6083e31dfdd590b61adbb19
Merge: fa94ff7 7097078
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 10:40:26 2020 -0600

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop

commit ed314ae6f5c3a847d7b35c7a008655a78a1e844e
Merge: f030745 7097078
Author: Dusan Jovic <[email protected]>
Date:   Thu Apr 9 16:12:50 2020 +0000

    Merge branch 'develop' into wcoss_cray_intel18

commit f030745a83d8767247e8a24d339f3be02c084d4e
Author: Dusan Jovic <[email protected]>
Date:   Wed Apr 8 20:15:09 2020 +0000

    Swicth to Intel 18 on WCOSS Cray. Run full rt.sh test on WCOSS Cray.

commit fa94ff7c2366b45ee4007ee39a66157c9ac84d74
Merge: 300a02d 78232d1
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 3 15:35:01 2020 -0600

    Merge pull request #34 from climbfuji/update_submodule_pointer_fv3atm_20200403

    Update submodule pointer for fv3atm 2020/04/03

commit 78232d1a64066e484ad7ecca29e6cb27d813b7f8
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 3 15:33:24 2020 -0600

    Update submodule pointer for fv3atm

commit 300a02da78769e73a82a6e490d9569168e619626
Merge: 02683a1 1b2c8e5
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 3 11:48:04 2020 -0600

    Merge pull request #33 from climbfuji/avoid_recompile_without_change

    dtc/develop: speed up static compilation

commit 1b2c8e54e605101fa81463d06204f73c38476c48
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 3 11:47:41 2020 -0600

    Revert change to .gitmodules, update submodule pointers for fv3atm

commit 93f78a0adec482e955422d1cad8b450fbaf5e1eb
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 2 13:59:12 2020 -0600

    Update .gitmodules and submodule pointer for fv3atm for code review and testing

commit 02683a142cb039e3aaa45ad3fa7b33211ac4b56b
Merge: 1336960 b6584d0
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 2 08:14:47 2020 -0600

    Merge pull request #32 from climbfuji/cleanup_radiation_tendencies

    Cleanup radiation tendencies, add RRTMGP tests on Cheyenne

commit b6584d043bac3f632d9d3009b69580e8212a197e
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 2 08:14:10 2020 -0600

    Revert change to .gitmodules and update submodule pointer for fv3atm

commit 7e39d9a5b495de78cec2714792291c8bbcf014bc
Author: Dom Heinzeller <[email protected]>
Date:   Wed Apr 1 10:13:45 2020 -0600

    Add RRTMGP tests and other DEBUG tests to regression test configurations for Cheyenne

commit a753eee47443b7627fb7b767de7a4c768524a015
Author: Dom Heinzeller <[email protected]>
Date:   Wed Apr 1 10:12:46 2020 -0600

    Update .gitmodules and submodule pointer for fv3atm for code review and testing

commit 133696003b12fbbc683fda6e6b8bf8a2a0f3ff55
Merge: 75145a6 1c5ea68
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 30 09:19:36 2020 -0600

    Merge pull request #31 from climbfuji/update_cheyenne_gnu_to_9-1-0

    Update GNU compiler on Cheyenne to version 9.1.0

commit 1c5ea68db6a4b7c0fcee2be6dbbc78c13fd59bd4
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 30 07:57:45 2020 -0600

    modulefiles/cheyenne.gnu/fv3: update GNU compiler used on Cheyenne to version 9.1.0 to be able to compile RRTMGP code

commit 75145a6fcd06dd224d510cf6ca00dc83862525f4
Merge: b02442b 6d42d95
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 26 10:38:57 2020 -0600

    Merge pull request #29 from climbfuji/add_rrtmgp_dom

    RRTMGP in ufs-weather-model

commit 6d42d95235a8291629d77f42c1c5cf2d4f516102
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 26 10:36:08 2020 -0600

    Revert change .gitmodules and update submodule pointer for fv3atm

commit 55936be6cb9ee463bb7195173fe58a1ec05f1e8f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 26 10:12:14 2020 -0600

    Update submodule pointer for FV3 following code review changes

commit 9a647bd60a72f1a6454bbcb263d4361189c368d8
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 25 14:44:11 2020 -0600

    Add REPRO test for fv3_ccpp_rrtmgp

commit a799e2958eed087ef594c9191da2dd23c94fcc39
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 25 06:25:12 2020 -0600

    Update submodule pointer for fv3atm after merging Python 3 compatibility PR

commit e04023e2abbde1f0b6d43dc5100b5af2cbb5e005
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 23 13:59:44 2020 -0600

    Update submodule pointer for FV3 after RRTMGP bugfixes

commit bf0a2c421997f9aca4e29066de59d6b9061b6274
Merge: b6d9813 44604a0
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 19 11:57:40 2020 -0600

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into add_rrtmgp_dom

commit b6d9813220f8c40294ea0f823f4d9bdcc165f40d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 19 11:46:35 2020 -0600

    Add RRTMGP regression tests in DEBUG and PROD mode, update compile_cmake.sh to work with the CCPP framework changes

commit acd17fcdbbd113187814b4e5cf1d0a46bedfff7b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 18 06:31:56 2020 -0600

    Update .gitmodules and submodule pointer for fv3atm for code review and testing

commit b02442b1e24e6291229edb3b9381d201b6c49baf
Merge: 028f778 1c9fb8b
Author: Dom Heinzeller <[email protected]>
Date:   Tue Mar 17 08:11:23 2020 -0600

    Merge pull request #28 from climbfuji/final_pr_before_merging_to_develop_or_master_20200313

    dtc/develop: final PR before merging to develop or master (support for hera.gnu, change rt.sh logic for parsing rt config files)

commit 1c9fb8b164922e600c8f44e3034574a60d66cf21
Author: Dom Heinzeller <[email protected]>
Date:   Tue Mar 17 08:10:01 2020 -0600

    Revert change to .gitmodules and update submodule pointer for fv3atm; keep NEMS submodule pointer as-is for now

commit 12cd2813ab10c63e812bb18e1d9db748810d54b6
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 16 20:30:59 2020 -0600

    Update submodule pointer for fv3atm

commit d260b130908c761dbe774ae389ff0bc43e4006ec
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 16 10:10:37 2020 -0600

    tests/rt_gnu.conf: run GFDLMP tests only on Cheyenne

commit 24026e9e6fe0203c3ffeb4b547422cce10a1d801
Author: Dom Heinzeller <[email protected]>
Date:   Sun Mar 15 19:36:13 2020 -0600

    Update .gitmodules and submodule pointers for FV3 and NEMS for code review and testing

commit 3ff3f621a2641d547e77b620dfc4492badc07a43
Author: Dom Heinzeller <[email protected]>
Date:   Sun Mar 15 19:35:53 2020 -0600

    Support for hera.gnu, compiler-specific baseline directory on hera, modify rt.sh so that COMPILE and APPBUILD lines without a machine name are executed on all machines (same as RUN lines), change rt_gnu.conf accordingly

commit 028f7786ef05d422dba7578fd2eaff78cc92f182
Merge: cf3ba9a 103078a
Author: Dom Heinzeller <[email protected]>
Date:   Fri Mar 13 13:08:58 2020 -0600

    Merge pull request #27 from climbfuji/update_from_dev_emc_20200312_and_other_changes

    Update from emc/develop 2020/03/12 and other changes

commit 103078a0b1337fd0cc7bf71af61d63a108e1579e
Author: Dom Heinzeller <[email protected]>
Date:   Fri Mar 13 13:06:56 2020 -0600

    Revert change to .gitmodules, update submodule pointer for fv3atm

commit 46b67da2ee62bca1d91b52115b536c8c942d8696
Author: Dom Heinzeller <[email protected]>
Date:   Fri Mar 13 07:49:51 2020 -0600

    Bugfixes to regression test configuration files

commit 43467b8c07a1d5ad2eafa3404fb654f1c49b1c02
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 13:17:53 2020 -0600

    Turn of IPD stochy test, turn off IPD Thompson test, add GSD debug test, add Thompson/Thompson-no-aerosol prod and debug test

commit def339f4fb1a058edd751e2af2656a32b0b8c9e6
Merge: 9a35215 cf3ba9a
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 13:16:08 2020 -0600

    Update date tag for baseline to 20200313

commit cf3ba9a6fa36acf1dd78d4d50068b0039c51b277
Merge: bde9300 edcf5df
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 13:11:19 2020 -0600

    Merge pull request #26 from climbfuji/merge_emc_develop_20200311_after_moorthi_before_dycore_pr7

    dtc/develop: merge emc/develop 2020/03/11 (after Moorthi's commit, before dycore OMP bugfix)

commit edcf5dfd7a48a2b181775a743b3b1a8b0c705d50
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 13:09:30 2020 -0600

    Revert change .gitmodules and update submodule pointer for FV3

commit 9a352157499fa50686cf824ec739871afea3b63e
Merge: 91a72c6 0b62be9
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 11:22:59 2020 -0600

    Merge branch 'merge_emc_develop_20200311_after_moorthi_before_dycore_pr7' of https://github.com/climbfuji/ufs-weather-model into merge_emc_develop_20200311_after_moorthi_before_dycore_pr7

commit 0b62be9d52379406a1b8d0e2fd708705aa676724
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 11:22:39 2020 -0600

    tests/rt_ccpp_dtc.conf: bugfix, remove test that is no longer exercise/doesn't have a baseline

commit 91a72c6e7b7b44c864ecb73e1f2031d7a327b7d5
Merge: 1bb0c09 0a88706
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 10:40:24 2020 -0600

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into merge_emc_develop_20200311_after_moorthi_before_dycore_pr7

commit 1bb0c093de9a7a00f98733a4ba543f9928683021
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 08:54:02 2020 -0600

    Update .gitmodules and submodule pointer for FV3 for code review and testing, update CCPP regression tests from IPD, update tests/rt_ipd_prod_only.conf

commit 2e485f130d044d7e3c189d8b691f5a3ed10be23c
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 11 15:14:01 2020 -0600

    Update submodule pointer for NEMS

commit 2a8b0a1cb78773228014a3ed6543204d7c31bc86
Merge: bde9300 efd63fb
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 11 14:59:44 2020 -0600

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop

commit bde930024ebb6be41652f13a4fab2928e198ae5c
Merge: 67943a5 2d22078
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 9 12:45:51 2020 -0600

    Merge pull request #24 from climbfuji/update_dtc_develop_from_emc

    Update dtc/develop from emc/develop 2020/03/04

commit 2d22078fc4ba0b9243cf733fd985b206425709c4
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 9 12:44:14 2020 -0600

    Revert change to .gitmodules, update submodule pointer for FV3

commit 6e7230e3203d23e9ab2d54e40d1c1d306aef27d0
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 9 10:22:28 2020 -0600

    Remove regional tests that do not run on Cheyenne anyway, they are tested in rt.conf for all other machines

commit b28f277fdb604382d255fa25e78cfe9556f7aee5
Author: Dom Heinzeller <[email protected]>
Date:   Fri Mar 6 14:46:47 2020 -0700

    Bugfix for CCPP IAU test, turn off global c768 tests (frequent out-of-memory errors for both IPD and CCPP), turn off CCPP dynamic tests in rt_ccpp_dtc.conf and merge HAFS and CAPS regression tests into rt_ccpp_dtc.conf

commit 6150bd4d288fe20a01810df00e6518ab00b77bf0
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 4 09:37:20 2020 -0700

    Update submodule pointer for .gitmodules for code review and testing

commit 8d50b738f67b8d7f724c7d8e01e1d4664d7412f7
Author: Dom Heinzeller <[email protected]>
Date:   Wed Mar 4 09:31:33 2020 -0700

    CCPP regression test updates from IPD

commit d951469aeff67a51991aea6b3c3e1a5aa60e5c9b
Merge: 67943a5 47c7f9b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Feb 28 09:02:05 2020 -0700

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop

commit 67943a550c6783a8aa3575e608bf5c3688ddbab5
Merge: 2919f28 e07e3ea
Author: Dom Heinzeller <[email protected]>
Date:   Thu Feb 20 10:43:57 2020 -0700

    Merge pull request #22 from climbfuji/update_rt_intel_cheyenne

    dtc/develop: update rt_intel.conf (for Cheyenne only)

commit e07e3eae9b715ce8a59c08a6f3a0837b81a40851
Author: Dom Heinzeller <[email protected]>
Date:   Thu Feb 20 10:37:43 2020 -0700

    Update tests/rt_intel.conf to reflect removal of GFSv15 and GFSv15plus regression tests

commit 2919f28a56fb3127fca33976c4840cad156be4d1
Merge: 4b36630 3fe4713
Author: Dom Heinzeller <[email protected]>
Date:   Thu Feb 6 13:39:06 2020 -0700

    Merge pull request #21 from climbfuji/dom_combine_prs_20200204

    dtc/develop: combined PRs for ccpp-framework and ccpp-physics

commit 3fe471391d68c969718f8764e835064cca72bd53
Author: Dom Heinzeller <[email protected]>
Date:   Thu Feb 6 13:38:26 2020 -0700

    Revert change to .gitmodules, update submodule pointer for fv3atm

commit 21e1c31cc7d9e7bf753d89df040b74edd78a0eab
Author: Dom Heinzeller <[email protected]>
Date:   Tue Feb 4 17:22:47 2020 -0700

    Update .gitmodules and submodule pointer for fv3atm for code review and testing

commit 4b36630a4076a4ef18d3c7651ab20f04c88908b2
Merge: 4c2d541 2907bf9
Author: Dom Heinzeller <[email protected]>
Date:   Mon Feb 3 07:51:23 2020 -0700

    Merge pull request #20 from climbfuji/update_dtc_develop_from_develop

    dtc/develop: update from develop 2020/01/27

commit 2907bf95aa319e3ece0e4de2ff24858b01427327
Author: Dom Heinzeller <[email protected]>
Date:   Mon Feb 3 07:49:41 2020 -0700

    Revert .gitmodules change, update submodule pointers

commit 85e5a911ab95f532f7bdd4465eb4996225e58a35
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jan 29 16:42:58 2020 -0700

    Bugfix for tests/rt_ccpp_dtc.conf, need to specify dependencies for restart tests

commit c61c4216adb669358380b79aeb3b60e399c198b0
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jan 29 08:39:46 2020 -0700

    Bugfix for tests/rt_ccpp_dtc.conf, need to specify machine names for each COMPILE command

commit 5df8b17873e1004497226b203765fad32d7e6b7a
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jan 28 16:19:47 2020 -0700

    Revert baseline directory change in tests/rt.sh, use DTC baseline

commit 5507b9a53e32ce9076f6bca1767a47a42ab053c1
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jan 27 12:29:08 2020 -0700

    Update tests/rt_ccpp_dtc.conf and tests/rt_gnu.conf; add temporary regression test config tests/rt_ipd_prod_only.conf

commit 6ab3fda31af1372903b80a5c98377aafa3fdb19e
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jan 27 11:53:34 2020 -0700

    Update .gitmodules to use EMC'S NEMS repository instead of the NCAR fork

commit 23cdb90b6dbf89a04047b74516d9fd5ed6ceae00
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jan 27 11:34:39 2020 -0700

    Update .gitmodules for code review and testing

commit e69a08bdd7ec4c8079d04cb44a06ec46f90e2988
Merge: 4c2d541 52795b8
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jan 27 11:33:00 2020 -0700

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop

commit 4c2d541b95b34aa6507ffda2ccfd10058b039689
Merge: 5f1e9b4 2b6903e
Author: Dom Heinzeller <[email protected]>
Date:   Thu Dec 26 08:04:33 2019 -0700

    Merge pull request #19 from climbfuji/sar_fix_hrrr_ics

    Add regression test fv3_ccpp_gsd_sar_25km_debug

commit 2b6903e7ee545fc5a0a5300d6190aee459d1dab6
Author: Dom Heinzeller <[email protected]>
Date:   Thu Dec 26 08:02:40 2019 -0700

    Updates for new regression test fv3_ccpp_gsd_sar_25km_debug

commit c428ab3e07ad6f994e384c396cc89931ba32c62b
Author: Dom Heinzeller <[email protected]>
Date:   Thu Dec 26 08:02:02 2019 -0700

    Update submodule pointer for FV3 following merge of https://github.com/NCAR/fv3atm/pull/22

commit 5f1e9b49b99ecc29878d5f7894f1d977501176d1
Merge: 9fad3f0 5b1e5d6
Author: Dom Heinzeller <[email protected]>
Date:   Wed Dec 25 20:02:45 2019 -0700

    Merge pull request #17 from climbfuji/ww3_rt_ccpp_dtc_conf

    dtc/develop: turn off WW3 tests in rt_ccpp_dtc.conf for platforms other than hera.intel

commit 00d8b7718c906dba49b81e44efa72d35cb504a52
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 23 16:16:10 2019 -0700

    Add regression test fv3_ccpp_gsd_sar_25km_debug

commit 26b0ffa860608e9578b4d63c5a69a368782e6741
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 23 14:36:57 2019 -0700

    Update submodule pointer for FV3

commit 9fad3f0890a856fe1062a7cb3ad99383f9a61f09
Merge: 430976c 0bcd135
Author: Dom Heinzeller <[email protected]>
Date:   Sun Dec 22 20:47:58 2019 -0700

    Merge pull request #18 from climbfuji/revert_queue_change_cheyenne

    Revert PBS queue change on Cheyenne

commit 0bcd1350b8a3e90616e8172a2a66fb4de88a7880
Author: Dom Heinzeller <[email protected]>
Date:   Sun Dec 22 20:45:16 2019 -0700

    Revert PBS queue change on Cheyenne (back to premium)

commit 5b1e5d6ee8eaa2f859302ee52df0c1f8e35c2354
Author: Dom Heinzeller <[email protected]>
Date:   Fri Dec 20 10:26:44 2019 -0700

    Update of tests/rt_ccpp_dtc.conf: WW3 only supported on hera (hera.intel)

commit 430976cee88d38609e36c78c4ebe1021800cba66
Merge: bf05b97 22efd1f
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 17 15:51:59 2019 -0700

    Merge pull request #16 from climbfuji/update_dtc_develop_from_ufs_public_release_20191216

    Update dtc/develop from EMC develop and ufs_public_release 2019/12/16

commit 22efd1f20708386b0a5bd805154108e524aca589
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 17 15:51:12 2019 -0700

    Update submodule pointer for FV3 following the merge of https://github.com/NCAR/fv3atm/pull/21

commit caf8a8e7e8fe67ce479722e861d77966428c4dc1
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 17 14:39:07 2019 -0700

    tests/rt.sh: update regression test baseline to trunk-20191217

commit fb701e32644081009dc0d4cc99a0ddf04fee62c8
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 17 14:33:18 2019 -0700

    tests/fv3_conf/ccpp_*_run.IN: remove INPUT and RESTART as first step, because CCPP regression test directories are reused when the same job is run twice in CCPP dynamic and static mode

commit d071710fdcdb731eeed4017296f0f2fb1022e0a9
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 16 07:25:55 2019 -0700

    Rename suite FV3_GFS_v15.2 to FV3_GFS_v15p2, convert line endings to unix for  parm/ccpp_v15p2_c96.nml.IN and parm/ccpp_v16beta_c96.nml.IN, updates from ufs_public_release branch

commit 5a64854f435cee8d3d6d0096b4da0fdb50389aa9
Merge: bf05b97 3bc41ff
Author: Dom Heinzeller <[email protected]>
Date:   Sat Dec 14 07:17:25 2019 -0700

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop

commit bf05b97c62a08ca7adf9dfe18345339a1f15f24f
Merge: 9ac4703 b294dad
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 9 11:06:01 2019 -0700

    Merge pull request #11 from climbfuji/update_dtc_develop_from_emc_develop_and_collect_updates_20191205

    Update dtc/develop from EMC develop and collect updates 2019/12/05

commit b294dad3f8d410157d12ed4d503be4f41dc2fc1b
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 9 11:05:27 2019 -0700

    Update submodule pointer for FV3

commit b95c95add815cf5b91c128179d4487db9bb3d17a
Author: Dom Heinzeller <[email protected]>
Date:   Sun Dec 8 06:41:37 2019 -0700

    Update path to fix files for CCPP FA regression test, add rt_ccpp_hafs.conf

commit 2c913a44762795495399af6dadd6c143979775f2
Author: Dom Heinzeller <[email protected]>
Date:   Sat Dec 7 08:08:11 2019 -0700

    GFS v15.2 and GFS v16beta namelists for CCPP for UFS public release

commit 343c81601079265df3de8dac6834f1c8e41fd5b6
Merge: e34a99d e8896bb
Author: Dom Heinzeller <[email protected]>
Date:   Fri Dec 6 07:53:03 2019 -0700

    Merge branch 'dtc/develop' of https://github.com/panll/ufs-weather-model into update_dtc_develop_from_emc_develop_and_collect_updates_20191205

commit e8896bb03ffe55ffab67bf2ff9989ff3ce1d77fb
Author: Linlin.Pan <[email protected]>
Date:   Fri Dec 6 00:32:57 2019 +0000

    adding namelists for v15.2 and v16

commit ba683e9b08e0c3cef4ccde4cdc19c711a5201742
Merge: 0bf138f 9ac4703
Author: panll <[email protected]>
Date:   Thu Dec 5 17:20:20 2019 -0700

    Merge pull request #1 from NCAR/dtc/develop

    update

commit e34a99d9cba55140106086bb663d4bcd75c0b9d1
Merge: 9ac4703 7b70ad9
Author: Dom Heinzeller <[email protected]>
Date:   Thu Dec 5 15:52:42 2019 -0700

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop

commit 9ac4703f17beabf2148cbe9faebd0b63eb2add17
Merge: 0bf138f 69ed25d
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 3 15:24:27 2019 -0700

    Merge pull request #9 from climbfuji/dtc_develop_udpate_from_emc_20191127

    dtc/develop: update from EMC 2019/11/27

commit 69ed25d21eb3a0896b9bbb8578a0a6db27a8a75d
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 3 15:23:54 2019 -0700

    Update submodule pointer for FV3

commit 20d3b9844615fe674db7c5ca49d34897d2d42f39
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 2 11:13:37 2019 -0700

    tests/fv3_conf/ccpp_control_run.IN, tests/rt_ccpp_dtc.conf: bugfixes for new, coupled FV3-WW3 tests

commit bc29b379d541ab84fb09d358300d0791cf5ba5d6
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 2 11:12:50 2019 -0700

    tests/rt.sh: change default queue on cheyenne from premium to economy

commit e26a6145cbd6239b2662580ceb881d58a6bb5ad9
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 2 11:12:22 2019 -0700

    tests/rt.conf: move cheyenne.intel tests to tests/rt_intel.conf

commit 860f00e19d05a9104c9987e6fe4b4d719e0a00d7
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 2 11:10:53 2019 -0700

    Point to 2019.01 tag for FMS, update .gitmodules

commit 51d57f830ebbf941e26d710d28184f52543a34d5
Author: Dom Heinzeller <[email protected]>
Date:   Mon Dec 2 11:03:10 2019 -0700

    Update submodule pointer for FV3

commit 03e8e036cb9d5ca45ccbf7fb57e9f313d6118534
Author: Dom Heinzeller <[email protected]>
Date:   Fri Nov 29 17:01:30 2019 -0700

    Follow-up bugfix for tests/fv3_conf/ccpp_gsd_sar_run.IN, insert missing 'FV3' in path

commit af5fce1939fe3a105246041b6ca2180e49515265
Author: Dom Heinzeller <[email protected]>
Date:   Fri Nov 29 17:00:51 2019 -0700

    conf/configure.fv3.*.gnu: add '-Wall' to Fortran debug flags

commit 2deb2e16798cea96a9879159ea5f28eebf3b78d2
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 15:28:01 2019 -0700

    Update of CCPP regression test configurations to reflect changes from EMC

commit defe5faedbc930ff8d6cd4cf1ecd2f0ab4140e24
Merge: 49d5095 dca7a75
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 15:03:38 2019 -0700

    Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into HEAD

commit 49d5095ebf0b2e2c66438b6ae38d44957c9fa070
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 14:38:29 2019 -0700

    tests/fv3_conf/ccpp_gsd_sar_run.IN: bugfix, correct path to CCPP libraries for dynamic build

commit 4227033d37ee4bec3685a106eca5967bbabcbf0c
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 14:37:43 2019 -0700

    Update submodule pointer for WW3 to match EMC

commit 0bf138fabb51b071e54891b1f60ae5fb720e0736
Merge: 2857a21 04ad3e6
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 13:47:47 2019 -0700

    Merge pull request #8 from climbfuji/merge-gsd_develop-and-nems_machine_env_var

    dtc/develop: merge gsd/develop, allow environment variable NEMS_MACHINE to overwrite (or set) MACHINE_ID

commit 04ad3e68d43d9689fa6bb1f952c70daafa13540b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 13:46:15 2019 -0700

    Update submodule pointer for FV3

commit 77bdaa9c6e61e973a05f3ddfbe9b6682ccb4207c
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 26 20:23:00 2019 -0700

    parm/ccpp_gsd_sar.nml.IN, tests/rt_ccpp_gsd.conf: bugfixes for SAR and drag suite regression tests

commit 5b903fb718a20b04d862a6043d85c72ec4f0f7f9
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 26 12:03:50 2019 -0700

    Update submodule pointer for FV3

commit d541054af0c7085f961a3e8099627f0dba891285
Merge: 6fc17ca c37646e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 26 09:03:12 2019 -0700

    Merge branch 'nems_machine_env_var' of https://github.com/climbfuji/ufs-weather-model into dtc/develop

commit 6fc17ca178b20fe57111ef3b7ee2a22f3c0b31dc
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 26 09:02:09 2019 -0700

    Merge NEMSfv3gfs gsd/develop into ufs-weather-model dtc/develop, squashed commit of the following:

    commit a9afb3607115ba35cc3c841bf48d410a048912c8
    Merge: 6c9a70dc 2d13e99d
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Nov 21 15:44:02 2019 -0700

        Merge pull request #279 from climbfuji/update_submodule_pointers_rdlai

        Initialize Leaf Area Index (LAI) from climatology and other submodule updates

    commit 2d13e99dc0c5a39ece155e6ac6eb2bd5ddcc1037
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Nov 21 15:43:07 2019 -0700

        Update submodule pointers for ccpp/physics and FV3

    commit 1653ff116ddca30b690a7375006139eab55237de
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Nov 21 12:59:39 2019 -0700

        Update submodule pointers for FV3 and ccpp/physics

    commit caed402a8f5a6a535e58284f63f678e692f341d9
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Nov 20 16:24:56 2019 -0700

        Update submodule pointer for stochastic physics to point to the head of the master branch

    commit 38c66d903797bdc7dbbc99589badece212a63412
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Nov 20 16:13:30 2019 -0700

        Update FMS to the head of the GFS-FMS branch

    commit 29fbfcad795536eb763499ea98e9596d03c9d483
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Nov 20 16:13:08 2019 -0700

        Update submodule WW3 to point back to the NOAA-EMC version, set correct hash

    commit 6c9a70dcdf5da8f1f678ad17523ef7533291062f
    Merge: 8b1bd280 fd8b7b48
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Nov 19 20:54:26 2019 -0700

        Merge pull request #278 from climbfuji/add_gsd_sar_regression_test

        gsd/develop: add GSD SAR regression test

    commit fd8b7b487a7b6a2cb3ad0a2e395aaf874b6efd8f
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Nov 19 20:53:00 2019 -0700

        tests/tests/fv3_ccpp_gsd_sar: bugfix, correct name of control directory

    commit 86cc553107ace9e66429fbfee6e6e2a1dca88c73
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Nov 18 14:39:06 2019 -0700

        tests/tests/fv3_ccpp_gsd_sar: correct list of files to check

    commit 43dbf0504cf5f86b9ad416e2d6358043df3863fb
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Nov 18 09:22:07 2019 -0700

        Add regression test for GSD SAR

    commit 8b1bd2805a2543bb1a434dcc0718ca89e27ba284
    Merge: c73f665b 13329bf9
    Author: Dom Heinzeller <[email protected]>
    Date:   Sat Nov 2 06:08:45 2019 +0900

        Merge pull request #277 from climbfuji/gsd_develop_update_submodule_pointer_ccpp_physics_20191102g

        gsd/develop: update submodule pointer for ccpp-physics 2019/11/01

    commit 13329bf9b7d8191a4e85789d52f4a6174bf61c50
    Author: Dom Heinzeller <[email protected]>
    Date:   Sat Nov 2 06:06:24 2019 +0900

        Update submodule pointer for ccpp/physics

    commit c73f665b5838a2db86ba5bf65157c89f4ed90cc5
    Merge: fafa77ee 0f0778d4
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Oct 28 12:54:28 2019 +0900

        Merge pull request #276 from climbfuji/gsd_debug_test_and_submodule_pointer_update_20191028

        gsd/develop: add CCPP GSD suite debug test, reduce timestep for Thompson MP tests, update submodule pointers

    commit 0f0778d4cb84150c2b1b3a2e0fe7501b897f2d9f
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Oct 28 12:39:54 2019 +0900

        Update submodule pointer for ccpp/physics

    commit c3c0379e1cb10b7060095b9a85c045d6b3058e8b
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Oct 28 12:33:09 2019 +0900

        Add new regression test for GSD suite in DEBUG mode

    commit cc2706d9c35fbbd69048c244dc0997107b9a3c78
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Oct 25 11:14:30 2019 +0900

        Reduce timestep for regression tests using Thompson MP from 1200s to 600s

    commit fafa77eeae3696ff1fd9922b88becd3644b9dd55
    Merge: f3d1f6d2 e6b48fbe
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Oct 24 11:00:48 2019 +0900

        Merge pull request #275 from climbfuji/gsd_develop_update_submodule_pointer_20191024

        gsd/develop: update submodule pointer, remote theia

    commit e6b48fbea416696a5b23f6910df2697334c8d656
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Oct 24 10:57:13 2019 +0900

        Update submodule pointer for ccpp/physics

    commit 1bc10a8b7da94ed4d3648157ad9a8dfcef25180a
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Oct 21 08:20:15 2019 +0900

        Update submodule pointer for ccpp-physics

    commit b583bd011b9e4139c3ff9efc7fa0240554d39a28
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Oct 21 08:19:12 2019 +0900

        tests/rt_ccpp_gsd.conf: remove theia

    commit f3d1f6d212199af9eb47cd4e723eecbbdbd1f76c
    Merge: eac6d996 deec3095
    Author: Dom Heinzeller <[email protected]>
    Date:   Sun Oct 13 14:59:39 2019 +0900

        Merge pull request #265 from climbfuji/update_submodule_pointers_20191011_1

        gsd/develop: update submodule pointers for FMS and ccpp/physics

    commit deec3095e43efd3b1599052525a631faea17d7d0
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Oct 11 08:01:14 2019 +0900

        Update submodule pointers for ccpp/physics and FMS

    commit eac6d996d84085d4010e8e1bfc8dff1855f9e21f
    Merge: 49f6c48e e49075d7
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 24 14:21:16 2019 -0600

        Merge pull request #257 from climbfuji/update_submodule_pointers_gsd_develop_20190924

        gsd/develop: update submodule pointers 2019/09/24

    commit e49075d70b330b2a7dfa907d9bc7ad6e97a48992
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 24 14:19:43 2019 -0600

        Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

    commit 49f6c48edc94ba9d9ac0c143b6068ce56159cb00
    Merge: 5ea40b23 221bd404
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 24 12:56:42 2019 -0600

        Merge pull request #256 from climbfuji/update_gsd_develop_from_gmtb_develop_20190924

        Update gsd/develop from gmtb/develop 2019/09/24

    commit 221bd404496a25f133b1f4e7aaf068225dfd9446
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 24 12:51:44 2019 -0600

        Update CODEOWNERS and .gitmodules for gsd/develop, update submodule pointers

    commit e30fc6c67c3c98ceab5b0859fe47780de0859b91
    Merge: e7691783 3042e609
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 24 10:53:31 2019 -0600

        Merge pull request #255 from climbfuji/cleanup_remove_thompson_satadj

        gmtb/develop: cleanup work 2019/09/24

    commit 3042e6090e4e4b6d3f22d2e3ee0677df057263ae
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 24 09:52:12 2019 -0600

        Update submodule pointer for ccpp-physics, remove Thompson MP + saturation adjustment tests

    commit e7691783692215fb713ba60ae2799f33a2147efe
    Merge: f1b4c707 d5051cd2
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Sep 23 10:16:50 2019 -0600

        Merge pull request #254 from climbfuji/update_submodule_pointers_20190923

        Update submodule pointers 2019/09/23

    commit d5051cd2f28c7cb2df686db02664f98584c3fb70
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Sep 23 10:15:15 2019 -0600

        Update submodule pointers following https://github.com/NCAR/NEMSfv3gfs/pull/251 et al.

    commit f1b4c70787e949ac3557a4f4f89e549574c4065c
    Merge: 4d78478e e86179ec
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Sep 23 09:33:06 2019 -0600

        Merge pull request #251 from climbfuji/gmtb_develop_update_from_master_20190920

        gmtb/develop: update from master 2019/09/20, remove TRANSITION mode

    commit e86179ec519baba659f29c71ea119cf010e6020c
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 20 19:59:53 2019 -0600

        Update submodule pointer for ccpp/physics

    commit 136b3af34a6c4c9c759fa13f49ca0009e8e9d1c4
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 20 08:55:40 2019 -0600

        Remove TRANSITION mode

    commit 20a5de0f2bab4ddea82df0bb2682738244ac86f0
    Merge: c97254f5 31e98b23
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 20 07:41:07 2019 -0600

        Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD

    commit c97254f5dc9e84281fa26098b603e3436cead0ac
    Merge: 4d78478e fadc8080
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 20 07:24:46 2019 -0600

        Merge branch 'master' of https://github.com/NCAR/NEMSfv3gfs into HEAD

    commit 4d78478e98a4aa1e547dc714b9dd7b895f71f351
    Merge: af03bb30 4c1b7e7b
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 19 16:10:13 2019 -0600

        Merge pull request #250 from climbfuji/update_submodule_pointers_20190919

        Update submodule pointers for FV3, ccpp-physics, ccpp-framework 2019/09/19

    commit 4c1b7e7b99568e8e3d19c5727e6ba41b2c3ae2d7
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 19 16:08:16 2019 -0600

        Update submodule pointers for FV3, ccpp-physics, ccpp-framework

    commit af03bb30daac3be4b6aca41043612743f66d618c
    Merge: 80ff65a6 5aab0bee
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 19 14:40:18 2019 -0600

        Merge pull request #249 from climbfuji/myj_with_dom_mods

        gmtb/develop: MYJ PBL/SFC, Noah MP, Cheyenne modulefiles, cleanup rt*.conf

    commit 5aab0bee5e2952529cafb2191f0b8c6f53ea4f43
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 18 13:54:29 2019 -0600

        Update submodule pointer for FMS and ccpp/physics

    commit 1d09c3b363c6c0ac05cabe4ce6ec2d4cc86499ae
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 18 13:49:09 2019 -0600

        Bugfix for modulefiles/macosx.gnu/fv3

    commit 04321dc32e522e2ece1ddd952c5771922b45ce6a
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Sep 16 15:40:52 2019 -0600

        Update submodule pointers for FV3 and ccpp/physics

    commit 2bc9874472eb499d7381a37782fbf3ac04af266b
    Author: Dom Heinzeller <[email protected]>
    Date:   Mon Sep 16 15:37:57 2019 -0600

        ccpp/CMakeLists.txt: for GNU and REPRO mode, add -g to compiler options

    commit 9f5a6ca3be704d40d2473f5bb8017195dbd5d93e
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 17:21:26 2019 -0600

        Add hera.intel to rt_ccpp_caps.conf, rt_ccpp_gmtb.conf, rt_ccpp_gsd.conf

    commit a747a0687153c1e69f8a741bcbdbc67eff766943
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:43:45 2019 -0600

        Update submodule pointers for FV3, ccpp-framework, ccpp-physics

    commit 9091411f3fe01d44701545ed75d0b5fc90c313b0
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:43:24 2019 -0600

        Update ESMF version for macOS and linux platforms

    commit f1c3c4a37351e7097505cfe5ca136e4b2d5e5d2e
    Merge: 1aedd2bb 80ff65a6
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:41:38 2019 -0600

        Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into myj_with_dom_mods

    commit 1aedd2bb06899f3c273fb151d54e6c9c0b2bf2d8
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:25:52 2019 -0600

        tests/rt_ccpp_gmtb.conf: formatting changes

    commit 80ff65a69a144127015aa1703a73dbc123df008e
    Merge: a6b70173 4183ee57
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:23:34 2019 -0600

        Merge pull request #246 from climbfuji/gmtb_develop_metadata2html_batchconvert

        gmtb/develop: metadata2html batch processing

    commit 141f41e44c3977287808bb4d08f8adfeb2ecbcc1
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:10:38 2019 -0600

        Remove redundant regression test configurations

    commit 940b7d1a6de99438a9e5a33bab836dab52e8a0a6
    Merge: 26acc72b 3c961fa0
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:08:26 2019 -0600

        Merge branch 'noahmp' of https://github.com/grantfirl/NEMSfv3gfs into myj_with_dom_mods

    commit 26acc72b9c895c28f213a73aa17dbe4a953fdaab
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:01:40 2019 -0600

        Combining CCPP GFDLMP namelist template with MYJ changes, add default values to tests/default_vars.sh

        Remove separate regression test config for MYJ, add to rt_ccpp_gmtb.conf

    commit abf19ed89d7d0a84840cfccf759d2cad7b8c5526
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 16:00:17 2019 -0600

        modulefiles/cheyenne.*/fv3: update ESMF to 8.0.0bs48, use modules instead of setting environment variables manually

    commit 8a1cc14102eab44fdda81daaec0c0f6ba6a60a51
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 15:59:30 2019 -0600

        ccpp/suites/suite_FV3_GFS_2017_myj.xml: update with stochastic_physics and UGWD changes

    commit 3c961fa0bcf21dc5e5020b1a326caf47c580c58b
    Author: Grant Firl <[email protected]>
    Date:   Fri Sep 13 14:52:04 2019 -0600

        add noahmp tests to rt.conf and rt_ccpp_gmtb.conf

    commit db00f41e14c62aeadad503119e95f287562bd4d7
    Merge: b34799b2 282ad6b6
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 10:46:04 2019 -0600

        Merge branch 'myj_from_qingfu' into detect_machine_cheyenne_update_20190912

    commit a6b701733c4b1571a8a54c12db2142b3b5f9b815
    Merge: 079b0b14 b34799b2
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Sep 13 09:37:14 2019 -0600

        Merge pull request #247 from climbfuji/detect_machine_cheyenne_update_20190912

        gmtb/develop: update tests/detect_machine.sh for Cheyenne

    commit b34799b26f6c956adc313027ffd6c51204e19acb
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 12 21:17:03 2019 -0600

        tests/detect_machine.sh: detect cheyenne with and without .ib. in hostname

    commit 4183ee576bfedea4fec85c72d3f0d8f26c2900e7
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 12 15:38:08 2019 -0600

        ccpp/config/ccpp_prebuild_config.py: remove outdated version number from comment

    commit 92d6056d8b90d98e3ae2ffca275d5767f634b449
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 12 08:45:09 2019 -0600

        Update submodule pointer for ccpp/framework

    commit 25486e833de3d752824ef391474f939daf370ca4
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 12 08:44:55 2019 -0600

        ccpp/config/ccpp_prebuild_config.py: add new variable METADATA_HTML_OUTPUT_DIR required for metadata2html batch processing

    commit d5dff46bb109e9a9c4707941013db1e47f221760
    Author: Grant Firl <[email protected]>
    Date:   Tue Sep 10 17:42:35 2019 -0600

        remove stochastic physics calls from suite_FV3_GFS_2017_gfdlmp_noahmp.xml

    commit d114de7b13be53593146c39cacf939affda4c56f
    Merge: 2c378470 079b0b14
    Author: Grant Firl <[email protected]>
    Date:   Tue Sep 10 17:38:07 2019 -0600

        Merge branch 'gmtb/develop' into noahmp

    commit 079b0b14c8dabc0e510119de4be1ab0ec0c39dc2
    Merge: c28e4020 20a8a674
    Author: Dom Heinzeller <[email protected]>
    Date:   Sun Sep 8 20:44:52 2019 -0600

        Merge pull request #245 from climbfuji/gmtb_develop_update_submodule_pointers_20190908

        gmtb/develop: update submodule pointers 2019/09/08

    commit 20a8a674fd496965423d07936039a355df1da0ff
    Author: Dom Heinzeller <[email protected]>
    Date:   Sun Sep 8 20:42:53 2019 -0600

        Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

    commit c28e4020d3616f8b2de6d42f7b15e49a34f6e8fa
    Merge: 5b120105 69b55a7c
    Author: Dom Heinzeller <[email protected]>
    Date:   Sun Sep 8 20:32:26 2019 -0600

        Merge pull request #243 from climbfuji/gmtb_develop_monster_merge_20190904

        Convert all schemes to new metadata, merge gsd/develop, update from Vlab, update of CCPP physics with IPD physics changes, GNU portability

    commit 2c378470a94f672d726a865ee67fc18e61e5e86c
    Author: Grant Firl <[email protected]>
    Date:   Fri Sep 6 15:13:34 2019 -0600

        move calculation of precipitation rates for NoahMP to pre-NoahMP scheme rather than GFS_MP_generic_post for B4B testing

    commit 69b55a7c7c39ece01f97fef334012cbcc5a6e079
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Sep 5 21:48:25 2019 -0600

        Update submodule pointer for ccpp/framework

    commit e67e618bb89dd396235e5dff186d11b458169b0b
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 21:18:48 2019 -0600

        Bugfix for GSD suites: replace gwdps_pre with GFS_GWD_generic_pre

    commit fadc80809693b39557f8ab4b75329bbf0106c519
    Merge: 64f209ce 097468ca
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 16:45:51 2019 -0600

        Merge pull request #244 from climbfuji/github_master_update_submodule_pointer_FV3_20190904

        GitHub master: update submodule pointer for FV3

    commit 097468ca99392eb208ee90039f3fc9b1e07ce903
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 16:44:20 2019 -0600

        Update submodule pointer for FV3

    commit 64f209cee5a7f364d5a93df27ad8e071f7f4682d
    Merge: 45b389ae 8fe8d004
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 16:41:54 2019 -0600

        Merge pull request #242 from climbfuji/github_master_update_from_vlab_master_20190904

        Update GitHub master from Vlab master 2019/09/04

    commit a105b2c92f91557b74cf439740628cfbddbc845c
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 15:41:35 2019 -0600

        Update submodule pointers for FV3 and ccpp/physics

    commit d5c4e5faa2994d2d75c48d27121ccb5bc46b9c9e
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 15:41:18 2019 -0600

        ccpp/config/ccpp_prebuild_config.py: add new dependency ccpp/physics/physics/samfaerosols.F

    commit bd52519b589955ecf40e8e3dc2dfe6b087419210
    Author: Grant Firl <[email protected]>
    Date:   Wed Sep 4 13:36:21 2019 -0600

        add noahmp-specific rt.conf

    commit 7d142eb30608f14e8a2a7995f8f37bd8b52445af
    Author: Jun Wang <[email protected]>
    Date:   Tue Sep 3 01:39:37 2019 +0000

        NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency

        Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951

    commit da04e9ae8ecd7448732903b138ae29a675509b37
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 11:04:02 2019 -0600

        ccpp/suites/suite_FV3_GFS_v15_gf.xml: fix merge conflict

    commit 3b81d224bdb9b33a7b5743a6c7f1bd836d46cb26
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 11:00:34 2019 -0600

        ccpp/suites/*.xml: remove stochastic_physics and stochastic_physics_sfc schemes from new SDFs

    commit 3c247950ad1ddcfe34a3f9a53f53127309a5b3d1
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 10:57:18 2019 -0600

        Update submodule pointers for ccpp/framework and ccpp/physics

    commit 8fe8d0041c672b12da0e360f59ab2aa746efbef2
    Author: Jun Wang <[email protected]>
    Date:   Tue Sep 3 01:39:37 2019 +0000

        NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency

        Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951

    commit 7b9cd36b2d17dfbe7693b1669077c7a07b4b8342
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 10:11:08 2019 -0600

        ccpp/config/ccpp_prebuild_config.py: add sfc_cice scheme

    commit 79e5cd20c3b40effb990573a013e040b03ccb08b
    Merge: b9e05586 5ea40b23
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 09:18:44 2019 -0600

        Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion

    commit b9e05586d33eac6902fb3e64d7646489c3b25fe1
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 08:22:02 2019 -0600

        modulefiles/macosx.gnu/fv3: improve setting compilers so that it works when MPIF90 etc are not set

    commit ceef678c966308e22ba2d08fd26a6526e6f4064b
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Sep 4 08:18:39 2019 -0600

        ccpp/config/ccpp_prebuild_config.py: add ccpp_types to converted metadata dictionary

    commit 0aafc0a34ed6649d8e54d058f96e83712162bbda
    Author: Grant Firl <[email protected]>
    Date:   Tue Sep 3 15:08:02 2019 -0600

        update SDF using noahmp

    commit 99626b8c2da1a22d6abb9da32cc3fc9168614ba7
    Merge: 235b712b 5b120105
    Author: Grant Firl <[email protected]>
    Date:   Tue Sep 3 15:06:00 2019 -0600

        Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into noahmp

    commit caa9037ab43b21fd727d1d030b4cef9ecab7f1d3
    Author: Dom Heinzeller <[email protected]>
    Date:   Wed Jul 10 08:05:30 2019 -0600

        compsets/fv3.input: set variables DO_SPPT, DO_SHUM, DO_SKEB, DO_SFCPERTS for fv3_stochy test

    commit bf8c2ded4b6779c9e1446507057f38a384b98167
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Jul 9 14:33:37 2019 -0600

        parm/input.nml.IN, tests/tests/fv3_stochy: add new namelist options do_sppt, do_shum, do_skeb, do_sfcperts to namelist template, set for fv3_stochy test

    commit 85b7a7a2c32a19971ac89255f9b9d595829902a7
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Jul 9 14:31:48 2019 -0600

        ccpp/config/ccpp_prebuild_config.py, ccpp/suites/*: remove stochastic physics from CCPP config and suite definition files

    commit d33df0427b1d6df35ff92edcab2e152d08499f15
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Jul 9 14:30:55 2019 -0600

        Add new submodule stochastic_physics, located in directory with same name

    commit c061af4a2d8f1a8318ca40aacdfb25ccec353f15
    Merge: 2483ed32 5b120105
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 3 09:22:32 2019 -0600

        Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion

    commit 5b1201056ec3187c04f7edb9d8afaac2465b4e9b
    Merge: 0ab90a12 fd7d0f1e
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 3 09:19:54 2019 -0600

        Merge pull request #239 from climbfuji/gmtb_develop_update_from_master_20190830

        gmtb/develop: update from master 2019/08/30

    commit 2483ed324e53de72fa67de24cb1d04d492b1c862
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 3 08:31:04 2019 -0600

        ccpp/build_ccpp.sh modulefiles/gaea.intel/fv3: update for gaea following wcoss_cray to avoid setting NETCDF and HDF5 in modulefile

    commit 45b389ae0e2fea91bb71edcceef481601827a5c5
    Merge: 257f2a2e ce0c61f6
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 3 08:23:51 2019 -0600

        Merge pull request #240 from climbfuji/update_submodule_pointer_in_NEMSfv3gfs_20190903

        master: update submodule pointers for FV3, NEMS, WW3

    commit ce0c61f644c95afc7f8dfa49ce6678d40356f54b
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Sep 3 08:22:21 2019 -0600

        Update submodule pointers for FV3, NEMS, WW3

    commit 257f2a2eec6f9ca902c4a2aac9fd312f24470d9b
    Merge: a1a54d1f 95583de5
    Author: Laurie Carson <[email protected]>
    Date:   Mon Sep 2 14:15:08 2019 -0600

        Merge pull request #238 from climbfuji/update_from_noaaemc_dev_20190830

        Update GitHub NCAR master from Vlab master

    commit fd7d0f1e022c60a010691a51dbc866b82a48c1c1
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 15:43:28 2019 -0600

        Update submodule pointer for ccpp-physics

    commit 15c64a190aa7af38dce3a9154d7bae9bbe1e381c
    Author: Jun Wang <[email protected]>
    Date:   Tue Aug 27 20:23:05 2019 +0000

        NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2)

        Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d

    commit 50962a88c93b90930d747e1e007f10c21b042fdb
    Author: Jun Wang <[email protected]>
    Date:   Sun Aug 25 02:56:05 2019 +0000

        NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3

        Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9

    commit 5f481c8f5a36a2c0ae56dd02645bd5ec591dcc6f
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 15:33:53 2019 -0600

        Update .gitmodules to point to NCAR repro and branch gmtb/develop for new submodule WW3, update submodule pointer

    commit 872693bea7e160edb478b05cfb68e96e3671ec8c
    Author: Jessica.Meixner <[email protected]>
    Date:   Tue Aug 20 12:10:34 2019 +0000

        NEMSfv3gfs: this commit refs #65894, adding WW3

    commit 95583de5ce6c4cbb83abe35b969476ba88628cca
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 11:29:32 2019 -0600

        Add default branch develop for WW3 and update submodule pointer

    commit a2fc15ec2140ef5b5e80dc4bd4b2d88430a9d59d
    Author: Jun Wang <[email protected]>
    Date:   Tue Aug 27 20:23:05 2019 +0000

        NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2)

        Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d

    commit c15a5f76e78c08c68e3afb0d5e5194f55dcdd855
    Author: Jun Wang <[email protected]>
    Date:   Sun Aug 25 02:56:05 2019 +0000

        NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3

        Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9

    commit 100dc801cb2901618f778720c6ad4426070ce4c7
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 10:17:47 2019 -0600

        Update .gitmodules so that WW3 points to the NCAR repository

    commit 25aa6fe7d55240903a132fc81dd9fb9b8aca0631
    Author: Jessica.Meixner <[email protected]>
    Date:   Tue Aug 20 12:10:34 2019 +0000

        NEMSfv3gfs: this commit refs #65894, adding WW3

    commit 0ab90a125b63b89d29bb73e0f640000b6c5b74a0
    Merge: cee7b3fe b77f1471
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 07:42:51 2019 -0600

        Merge pull request #237 from climbfuji/gmtb_develop_update_submodule_pointers_20190830_1

        gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics

    commit b77f14719ac17b564f85d69383c99b8b161de817
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 07:40:55 2019 -0600

        Update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics

    commit cee7b3fe354e07a29dbc9fa49235d909f4cf528a
    Merge: f4671a1c d02d0c16
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 30 07:39:01 2019 -0600

        Merge pull request #234 from climbfuji/bugfix_rt_conf

        gmtb/develop: bugfix for rt.conf

    commit a1a54d1f5159aa927ac4d4b01abaa6548040ff52
    Merge: 8a1e235d ed0c436a
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Aug 29 15:32:08 2019 -0600

        Merge pull request #236 from grantfirl/master

        add Julie as codeowner

    commit ed0c436ad2aa1c52a6a6a5fa1ca7a9fc210956d3
    Author: Grant Firl <[email protected]>
    Date:   Thu Aug 29 15:00:06 2019 -0600

        add Julie as codeowner

    commit f4671a1c9f394609f33e0f04a893ab1a8147f8bb
    Merge: ea22d467 a667940f
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Aug 29 14:58:30 2019 -0600

        Merge pull request #235 from grantfirl/gmtb/develop

        add Julie as codeowner

    commit a667940f9cfff12e41cb5134f86e66babc76081f
    Author: Grant Firl <[email protected]>
    Date:   Thu Aug 29 14:52:42 2019 -0600

        add Julie as codeowner

    commit d02d0c1679ffd3b57b2d2d049f86efdc531b51fd
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Aug 29 08:06:47 2019 -0600

        Update submodule pointers for FV3 NEMS ccpp/physics

    commit 65238966d6c574b314bc1b0e487e59f78d9b5552
    Author: Dom Heinzeller <[email protected]>
    Date:   Thu Aug 29 08:06:02 2019 -0600

        tests/rt.conf: bugfix, correct name of suite FV3_GFS_2017_gfdlmprad_gwd to FV3_GFS_2017_gfdlmp_gwd

    commit 282ad6b657ff250eefba8092975b484681479d8a
    Author: Qingfu Liu <[email protected]>
    Date:   Wed Aug 28 19:53:24 2019 +0000

        correct file content tests/tests/fv3_ccpp_gfs_myj

    commit 29993a06e32ea08b588bed93d7e088ea386daf7c
    Author: Qingfu Liu <[email protected]>
    Date:   Wed Aug 28 19:49:13 2019 +0000

        correct file content tests/tests/fv3_ccpp_gfs_myj

    commit 5ea40b233539ed0b8a86d8ef54ed59cba4c89621
    Merge: e06da970 01f6a0f8
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 16:40:43 2019 -0600

        Merge pull request #232 from climbfuji/gsd_develop_update_submodule_pointers_20190827

        gsd/develop: update submodule pointers for FV3 and ccpp/physics

    commit 01f6a0f87727751a8252a576bceed7bc5b9729a7
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 16:39:04 2019 -0600

        Update submodule pointers for FV3 and ccpp/physics

    commit ea22d467cb4e6289768ca625133f68d803cc4772
    Merge: 8ba3d4ae 3150c4b4
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 16:32:58 2019 -0600

        Merge pull request #231 from climbfuji/update_submodule_pointers_gmtb_develop_20190827

        gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/physics

    commit 3150c4b432ac93119c578a1d0cb12a7b0e1e3fd6
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 16:30:38 2019 -0600

        Update submodule pointers for FV3 NEMS ccpp/physics

    commit 8ba3d4ae5bfd786895d54c26f398821d28601821
    Merge: 6aba4551 f91d7846
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 15:45:47 2019 -0600

        Merge pull request #230 from climbfuji/hera_update_20190827

        gmtb/develop: update hera config, enable regression testing

    commit f91d78461f1608bfdbe1de0d38a9527f8381cea7
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 15:04:42 2019 -0600

        Update submodule pointer for NEMS

    commit 235b712ba15d59c4d56aa990d3a9edeb30999496
    Author: Grant Firl <[email protected]>
    Date:   Mon Aug 26 15:40:00 2019 -0600

        add CCPP-based NoahMP test to RTs for rt_ccpp_gmtb.conf (plus new SDF based on suite_FV3_GFS_2017_gfdlmp.xml)

    commit e74e0d2ebd6430e39c2f869c7241be858776f385
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 13:53:55 2019 -0600

        Update submodule pointer for NEMS

    commit 290a484f1e3be763aced44c2dfd099c6d832ce2e
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 13:53:33 2019 -0600

        rt_hera_test.conf: temporary regression test config for testing on hera

    commit c52d27b0d8e99029d1e723ecde07d3ba0813da09
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 13:52:20 2019 -0600

        tests/rt.sh: enable regression testing with rt.sh, changes from Ratko, update STMP and PTMP for GMTB

    commit 6b9508c93f81383418ad1b779ce8d4bc2358aba4
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 13:48:01 2019 -0600

        modulefiles/hera.intel/fv3: update path to modules following transition from Juno test system to hera

    commit eb229d3cb145a7811d69348cb2167fbd5a5a097d
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 13:47:33 2019 -0600

        ccpp/build_ccpp.sh and conf/configure.fv3.hera.intel: don't use the AVX512 flags yet on hera

    commit 6aba455146a4a8d4629704e5226570116091691f
    Merge: 5c289838 75b5715e
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 07:17:17 2019 -0600

        Merge pull request #229 from climbfuji/gmtb_develop_update_submodule_20190827

        gmtb/develop: update submodule pointers for FV3, ccpp-physics, ccpp-framework

    commit 75b5715e41c6f978defaa04e38d41b8d20326488
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 07:15:40 2019 -0600

        Update submodule pointer for FV3, ccpp-physics, ccpp-framework

    commit 5c289838c1bc9d443319e4cdad4b23df5215fc77
    Merge: eb7b7ae8 48000a93
    Author: Dom Heinzeller <[email protected]>
    Date:   Tue Aug 27 07:13:20 2019 -0600

        Merge pull request #218 from bluefinweiwei/cires_ugwp

        UGWP Version 0

    commit 51299cadc6514199225605df04246e54446d6486
    Author: Qingfu Liu <[email protected]>
    Date:   Tue Aug 27 11:03:43 2019 +0000

        add MYJ surface layer scheme and MYJ PBL scheme to CCPP

    commit 75596f60b0d684413cf8a6f42567cd92195b3661
    Author: Grant Firl <[email protected]>
    Date:   Mon Aug 26 13:34:15 2019 -0600

        remove noahmp_pre.F90 from CCPP config since code was moved to existing interstitial scheme

    commit d913c69b7e11b23f5666c4f8432a6e0c80fe7036
    Author: Grant Firl <[email protected]>
    Date:   Fri Aug 23 18:04:07 2019 -0600

        remove module_wrf_utl.f90 from ccpp_prebuild_config scheme dependency list

    commit 48000a93dfd9b07159d3d006016c854e14a20886
    Merge: 266c9885 e38eda36
    Author: Weiwei <[email protected]>
    Date:   Fri Aug 23 13:53:36 2019 -0600

        Merge pull request #3 from climbfuji/ugwd_dom

        Delete tests/rt_with_ugwp.conf

    commit e38eda36b8d1d7181400059c3d7cc1af3511534d
    Merge: 789ab6bc 266c9885
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 23 13:50:02 2019 -0600

        Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into ugwd_dom

    commit 789ab6bc2ae4e04cdeaa580abbb0cbcf0c4d9cb7
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 23 13:48:59 2019 -0600

        Delete tests/rt_with_ugwp.conf

    commit 266c9885f97153154fa6caaaf0bbac87addda38b
    Author: Weiwei <[email protected]>
    Date:   Fri Aug 23 13:47:39 2019 -0600

        Delete rt_ugwp_only.conf

        Removed.

    commit b27a08aa3d2544024a0fb6adf0a38d339ac3a18c
    Merge: 5ffd3ed8 adc9df36
    Author: Weiwei <[email protected]>
    Date:   Fri Aug 23 13:22:27 2019 -0600

        Merge pull request #2 from climbfuji/ugwd_dom

        UGWD update for open PR to gmtb/develop

    commit adc9df36fbe5a866bcab77f709d368286d2a496d
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 23 11:59:13 2019 -0600

        Update submodule pointers

    commit 4410e285d4f0a99a68f2da799fa8d9d117e8ef1a
    Merge: 1499c32c eb7b7ae8
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 23 09:34:58 2019 -0600

        Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into ugwd_dom

    commit 1499c32c862f4471a72c85204208d01c847f8d2d
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 23 09:11:39 2019 -0600

        Update submodule pointers for FV3, ccpp/framework, ccpp/physics

    commit 7ae19849e6a6365adab0642e674a3e16b04cbbf3
    Author: Dom Heinzeller <[email protected]>
    Date:   Fri Aug 23 09:10:02 2019 -0600

        ccpp/suites/*: rename gwdps_pre to…
DeniseWorthen referenced this pull request in DeniseWorthen/ufs-weather-model Apr 7, 2021
@MinsukJi-NOAA
add utest related changes (#11)
ddb023c 
* Add utest change for hera
* Add utest change for orion
* Add utest change for dell p3
aliabdolali pushed a commit to aliabdolali/ufs-weather-model that referenced this pull request Jul 22, 2021
@jiandewang
Feature/add mom doc 0715 (ufs-community#11)
09feba4 
* add MOM6 documentation

* minor correction in MOM6 documentation
LarissaReames-NOAA pushed a commit to LarissaReames-NOAA/ufs-weather-model that referenced this pull request Oct 22, 2021
@climbfuji @DusanJovic-NOAA
Update dev/emc from dtc/develop: add dynamics code for Ferrier-Aligo …
a56907a 
…microphysics (ufs-community#11)
LarissaReames-NOAA pushed a commit to LarissaReames-NOAA/ufs-weather-model that referenced this pull request Oct 22, 2021
@climbfuji
Merge NCAR:dtc/develop into NOAA-EMC:dev/emc
34b4503 
- bugfix for GNU compiler
- reduce noise in stdout

Squashed commit of the following:

commit 86c127f5b810b87004aeed3a625f9445d469c27e
Merge: ce66d6a f9bbb4f
Author: Dom Heinzeller <[email protected]>
Date:   Fri Apr 10 11:32:21 2020 -0600

    Merge pull request ufs-community#11 from climbfuji/update_dtc_develop_from_dev_emc_20200409

    Update dtc/develop from dev/emc 2020/04/09

commit f9bbb4f12e032378050cef4b7e5ac4b65a16bb70
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 20:14:24 2020 -0600

    Bugfix for GNU compiler in model/fv_regional_bc.F90, reduce verbosity in driver/fvGFS/atmosphere.F90

commit ecca9978802ec9cc39dc114fd7363386f7ad9422
Merge: ce66d6a 80ce8ce
Author: Dom Heinzeller <[email protected]>
Date:   Thu Apr 9 09:38:48 2020 -0600

    Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD

commit ce66d6a56e89b6330a2bef763755c7154047d829
Merge: 4279bf7 9bacf55
Author: Dom Heinzeller <[email protected]>
Date:   Fri Mar 13 13:00:41 2020 -0600

    Merge pull request ufs-community#10 from climbfuji/update_from_dev_emc_20200312_and_other_changes

    Update from dev/emc 2020/03/12

commit 9bacf554ed078dfa8c09ee662e7608442288e2d5
Merge: 4279bf7 371a29a
Author: Dom Heinzeller <[email protected]>
Date:   Thu Mar 12 10:33:44 2020 -0600

    Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD

commit 4279bf78eb4ae0bad908eb991e3fb216018b7aea
Merge: 846f5a5 4858d33
Author: Dom Heinzeller <[email protected]>
Date:   Mon Mar 9 12:41:51 2020 -0600

    Merge pull request ufs-community#9 from climbfuji/update_dtc_develop_from_emc

    Update dtc/develop from dev/emc 2020/03/04

commit 4858d33838adcd87c1cd000ab4737dc0e7e56731
Merge: 846f5a5 db3acfb
Author: Dom Heinzeller <[email protected]>
Date:   Fri Feb 28 08:46:55 2020 -0700

    Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD

commit 846f5a54b0764db1478c9aca49a74bd38322d9ad
Merge: 3a4dfd8 9a290ee
Author: Dom Heinzeller <[email protected]>
Date:   Mon Feb 3 07:43:08 2020 -0700

    Merge pull request ufs-community#7 from climbfuji/update_dtc_develop_from_dev-emc

    dtc/develop: update from dev/emc 2020/01/27

commit 9a290ee5f3307a9d7b02762fe6c29a1f5ccd7f55
Merge: 3a4dfd8 a56907a
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jan 27 09:28:57 2020 -0700

    Merge branch 'dev/emc' of https://github.com/noaa-emc/GFDL_atmos_cubed_sphere into HEAD

commit 3a4dfd8c6c4ceb8cec06397f25cb229ecd98065b
Merge: 0c9ab9e 68576a6
Author: Dom Heinzeller <[email protected]>
Date:   Tue Dec 3 15:19:24 2019 -0700

    Merge pull request ufs-community#6 from climbfuji/dtc_develop_udpate_from_emc_20191127

    dtc/develop: update from EMC 2019/11/27

commit 68576a61f2a57236931e5ef1b8bd73a4256b0a5f
Merge: 0c9ab9e 452333a
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 27 14:13:08 2019 -0700

    Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD

commit 0c9ab9e3dfe6cda6fc78315b86a107a369756024
Merge: 9871607 b280b37
Author: Dom Heinzeller <[email protected]>
Date:   Fri Nov 22 16:17:57 2019 -0700

    Merge pull request ufs-community#5 from mzhangw/HAFS_fer_hires

    minimal changes to make nwat =4 compatible with Ferrier-Aligo MP scheme

commit b280b373b421fcb9d84bd1196a40ec56fcf279ff
Author: Man.Zhang <[email protected]>
Date:   Tue Nov 19 14:53:57 2019 -0700

    bug fix

commit 98c58ad3d0444859aae54c31bc2b86ba30b4a9ac
Author: Man.Zhang <[email protected]>
Date:   Tue Nov 19 14:35:10 2019 -0700

    bug fix

commit 8805acd93152bb76d5c4d0900f314631f549fbe2
Author: Man.Zhang <[email protected]>
Date:   Tue Nov 19 14:16:22 2019 -0700

    From Chunxi: The file fv_mapz.F90 also needs to be modified (K_warm)

commit f8a257a922a9047e98c176affec054e2a4d9c6a9
Author: Man.Zhang <[email protected]>
Date:   Thu Nov 14 19:12:39 2019 -0700

    use upper-case CCPP

commit 77f4fbad9311ad406c6486ad0912069de3085f07
Author: Man.Zhang <[email protected]>
Date:   Thu Nov 14 13:40:59 2019 -0700

     implement FA scheme water loading option if nwat =4

commit 987160799b3a1c0f11de9883843f20421eb03fe8
Merge: ed75004 786447c
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 5 06:59:34 2019 +0900

    Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD

commit ed75004634374b02f8b222dd873190a91126ce4f
Merge: 1d6035a f627bfb
Author: Dom Heinzeller <[email protected]>
Date:   Sat Oct 12 08:45:14 2019 +0900

    Merge pull request ufs-community#4 from climbfuji/update_gmtb_develop_with_vlab_master_20191006

    Update NCAR gmtb/develop with NOAA-EMC dev/emc 2019/10/06

commit f627bfb177dc1f2d0bd10371540c43c51ce8eec4
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 7 12:12:24 2019 +0900

    Add missing change in fv_cmp.F90 - now identical with EMC code

commit e868186fd7d64fc2eeb7ec2c59e88c889e62fc93
Author: Dusan Jovic <[email protected]>
Date:   Tue Sep 24 01:57:11 2019 +0000

    change delz from positive value to the original value in the model

commit 672eb0e8d67c008437724681250e7aa8aa81ec31
Author: fanglin.yang <[email protected]>
Date:   Thu Sep 5 19:24:09 2019 +0000

        VLab Issue #68141

        modified:   docs/FV3_citations.bib
        modified:   model/fv_cmp.F90

        1) Add an option (namelist parameter: intqs) to use temperature instead of the liquid frozen
        temperature to calculate saturation mixing ratio in deriving GFDLMP PDF cloud cover.
        2) Add a literature reference.

commit 1d6035ab053a6b5257b32dd9b4a49faa7ee4c78d
Merge: 94ab0e1 fec8205
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 09:32:55 2019 -0600

    Merge pull request ufs-community#2 from climbfuji/remove_transition_mode

    Remove TRANSITION mode

commit fec8205b9418dea28de4e2c9f05f347f3cf460d2
Author: climbfuji <[email protected]>
Date:   Fri Sep 20 08:52:01 2019 -0600

    Remove TRANSITION mode

commit 94ab0e1317ffa50279dd6269a462999a2bea15e7
Author: Jun.Wang <[email protected]>
Date:   Mon Aug 26 21:03:55 2019 +0000

    add option to output omega

commit b700cae673038f82189a1e6e0cb48a10a58ea726
Author: climbfuji <[email protected]>
Date:   Fri Aug 30 11:58:00 2019 -0600

    model/fv_dynamics.F90: replicating previous change to gmtb/develop branch of FV3, always allocate dtdt_m for IPD version

commit 3df11713e0ba9299d95512476a9ee784048629c9
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 10:46:56 2019 -0600

    Add codeowners for NCAR fork
epic-cicd-jenkins pushed a commit that referenced this pull request Apr 17, 2023
@JeffBeck-NOAA @BenjaminBlake-NOAA
Fix for ${target} definition in build_forecast.sh (#11)
2b544a3 
* Move path from /lfs3 to /lfs4 for NCEP libraries

* Update Externals.cfg for changes in UFS_UTILS and EMC_post, and checkout the NCAR fork of ufs-weather-model

* Add CODEOWNERS file and PR template to the repo

* Remove CODEOWNERS file from top level directory (now in .github directory like in regional_workflow)

* Update Externals.cfg hashs for UFS_UTILS, ufs-weather-model, and EMC_post

* Update build_forecast.sh for WCOSS

The modulefile directories for WCOSS do not have Intel on the end for some reason, so this change is needed for the definition of the target variable.

* Add CMAKE_Platform line in build_forecast.sh to correctly build on Jet

* Fix for the duplicate ${target} variable in build_forecast.sh

Co-authored-by: BenjaminBlake-NOAA <[email protected]>
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@DusanJovic-NOAA @climbfuji @jedwards4b @junwang-noaa