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Pull requests: ucscXena/xena-GDC-ETL

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Pull requests list

Add requirements.txt
#10 by ayan-b was merged Mar 11, 2019 Loading…
Add LICENSE
#14 by ayan-b was closed Mar 12, 2019 Loading…
1
Add more test for gdc module
#22 by ayan-b was merged Apr 8, 2019 Loading…
1
Code cleanup: Improve CLI Rebase and merge
#23 by ayan-b was merged Apr 30, 2019 Loading…
4 of 5 tasks
11
Set up parser for gdc2xena
#25 by ayan-b was closed May 13, 2019 Loading…
1
4
xena_dataset: Add tests for read_biospecimen(), read_clinical()
#26 by ayan-b was merged May 28, 2019 Loading…
2
xena_dataset.py: Allow user to download certain number of files
#27 by ayan-b was closed May 26, 2019 Loading…
3
xena_dataset.py: Resources --> resources
#28 by ayan-b was closed May 17, 2019 Loading…
Update docs for CLI
#30 by ayan-b was merged May 28, 2019 Loading…
3
CI: Test for min requirements
#33 by ayan-b was merged May 31, 2019 Loading…
@ayan-b
27
Add API method to generate Phenotype Matrix
#34 by ayan-b was closed Jul 31, 2019 Loading…
@ayan-b
56
Improve logging
#44 by ayan-b was merged Jun 17, 2019 Loading…
2
Instead of None return file_dict if file_dict is empty
#46 by ayan-b was merged Jun 17, 2019 Loading…
Skip the pipeline for a datatype if the Xena Matrix is found
#48 by ayan-b was closed Jun 19, 2019 Loading…
4
Add cnv to valid_dtype
#49 by ayan-b was merged Jun 20, 2019 Loading…
Add STARCounts data ready for merge review
#58 by ayan-b was merged Jul 2, 2019 Loading…
1
@ayan-b
8
Remove _EVENT and _TIME_TO_EVENT in the survival data files ready for merge review
#66 by ayan-b was merged Jul 11, 2019 Loading…
@ayan-b
1
Filter for blood derived samples in CNV data ready for merge review
#67 by ayan-b was merged Jul 11, 2019 Loading…
1
@ayan-b
1
Remove phenotype data having no genomic data
#68 by ayan-b was closed Jul 15, 2019 Loading…
1
@ayan-b
5
Add Pan-Can Phenotype Data
#94 by ayan-b was merged Aug 19, 2019 Loading…
@ayan-b
Drop list fields from XML files
#95 by ayan-b was merged Aug 19, 2019 Loading…
@ayan-b
1
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