The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Jul 3, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Image processing pipeline for spatial projects
Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas
DeltaFBA is a set of MATLAB functions that employs constraint-based modeling, in combination with differential gene expression data, to evaluate changes in the intracellular flux distribution between two conditions.
IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.
Codes for data processing and statistical analysis involved in GAMBA.
This repository contains files for the analysis of differentially expessed genes that have significant mutations around splice sites in Chordoma transcriptome.
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