Tools for fast and flexible genome assembly scaffolding and improvement
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Updated
Feb 14, 2024 - Python
Tools for fast and flexible genome assembly scaffolding and improvement
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Long-reads Gap-free Chromosome-scale Assembler
Tools for Downloading, Customizing, and Processing Time Series of Satellite Images from Landsat, MODIS, and Sentinel
Close assembly gaps using long-reads at high accuracy.
A scalable implimentation of HANTS for time sereis reconstruction in remote sensing on Google Earth Engine platform
KEGG Module Evaluation Tool
Gap2Seq is a gap filling and insertion genotyping tool.
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
hesseflux provides functions used in the processing and post-processing of the Eddy covariance flux data of the ICOS ecosystem site FR-Hes.
GapFill: gap filling functions for motion capture marker data
Missing earthquake data reconstruction in the space-time-magnitude domain
Time series processing library
Toolkit created to do extraction, gap-filling and trend analysis over Sentinel 2 time-series from Earth Engine
Python library for quality control and reconstruction of meteorological data
Value propagation-based spatial/spatio-temporal interpolation
Genome assembly - From theory to practice (and back)
COMMIT: Community-dependent gap-filling considering metabolite leakage
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