synteny
Here are 33 public repositories matching this topic...
Pipeline to create phage genome synteny graphics from genbank files
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Jul 29, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
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Jul 24, 2024 - Python
Synteny Mapping and Analysis Program
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Jul 24, 2024 - Java
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
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Jul 26, 2024 - Nextflow
Run and compare algorithms for phylogenetic reconciliation and super-reconciliation
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Jul 17, 2024 - Python
A genome visualization python package for comparative genomics
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Jul 13, 2024 - Python
Pipelines for the production of Treeval data
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Jul 18, 2024 - Nextflow
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
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Apr 4, 2024 - HTML
An R package to infer and analyze synteny networks from protein sequences
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Mar 21, 2024 - R
AKRUP: ancestral karyotype reconstruction universal pipeline
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Dec 4, 2023 - Python
Federating genomes with love (and synteny derived from functional annotations)
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Nov 22, 2023 - TypeScript
R package to visualize Synteny across biological species
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Nov 18, 2023 - R
Query sequence database by HMMs arranged in predefined synteny structure
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Nov 3, 2023 - Python
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
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Feb 15, 2023 - Java
A visualization tool for viewing MCscanX Synteny Collinearity files (outdated please check description or readme)
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Dec 8, 2022 - JavaScript
Finding regions of similarity between plasmids
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Nov 2, 2022 - Nextflow
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
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Jun 9, 2022 - Python
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