R Package for Data-Driven Antimicrobial Stewardship & Surveillance in Hospitals

geohabnet R package

A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland

Demonstrates the methods of suppressing small cell counts in a provincial surveillance system to prepare data for public release

Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.

Applies algorithm by Ypma et al. (2013) to detect clusters in surveillance data

Workflow and Shiny App for collecting and displaying mosquito trap count data for the City of Winnipeg & City of Brandon.

A R package for the implementation of ICD-10-CM injury matrix

A data repository for animal surveillance efforts of Valley Fever.

Code for the Lancet Digital Health manuscript

ShinyApp repo for the CovidTracker, any details further than the codes here available please send an email to rafael.lopes at yale.edu

Analyzing skin microbiomes of cave-roosting bats for natural protection from white-nose syndrome

This One Health AMR repository is a set of metadata packages, reporting scripts and documents that allow countries to create a starting national Antimicrobial Resistance surveillance system based on open-source components. This global public good is the result of a 3-year One Health AMR project Sponsored by FIND (the Foundation for Innovative Ne…

Functions for the ViParc project

Shiny app to visualize surveillance data

Curso de análise espacial usando o R

R code for the case study of the paper "Model-based disease mapping using primary care registry data" that is under review.

Reportes de vigilancia de VICo

Package for validating IDSR data (check missings and threshold flags), produce weekly data summary and template for monthly bulletin