R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
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Updated
Jul 18, 2024 - R
R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice
Code for the spatialLIBD R/Bioconductor package and shiny app
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
Spatially-aware quality control for spatial transcriptomics
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
Multi-slice Spatial Transcriptome Domain Analysis.
Pipeline for SpatialTranscriptomics and 10X Visium data
Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
From geospatial to spatial -omics
Scatterbar - an alternative data visualization for proportional data across many spatially resolved coordinates
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
DOT
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
Haplotype-aware CNV analysis from single-cell RNA-seq
R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)
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