Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
github
python
vcf
gatk
variants
snp
annotator
macaron
snv
annotation-framework
snpeff
snv-annotation
codon
snpcluster
pcsnv
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Updated
May 18, 2020 - Python
Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
This workflow performs annotation on SNV and INDEL VCFs.
A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
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