Nextflow pipeline for Mutect2 somatic variant calling best practices
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Updated
Jun 14, 2024 - Nextflow
Nextflow pipeline for Mutect2 somatic variant calling best practices
GATK 4 Mutect2 Somático
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
demo pipeline for testing different data chunking methods for MuTect2
A Snakemake pipeline for copy number variant calling without normal tissue samples
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