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May 15, 2017 - Shell
sequence-alignment
Here are 321 public repositories matching this topic...
Perl Implementation of a three different techniques for DNA sequence alignment to calculate similarity between 2 DNA sequences
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Oct 5, 2018 - Perl
Optimal Sequence Aligner allowing for Long Gaps
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May 19, 2020 - C++
Extract NEXUS partition blocks from a collection of concatenated alignments
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Mar 5, 2022 - Rust
Python scripts for performing bioinformatics for small read sequence alignment to reference genomes and SNP marker calling.
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Nov 8, 2023 - Python
DNA read mapping (seed-extension-aligner)
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Dec 18, 2017 - C++
Durham University Year 1 assignment to optimise simple sequence alignment scoring in bioinformatics implemented in Python
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Dec 19, 2020 - Python
Sequence Alignment tool
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Mar 24, 2024 - Perl
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
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Apr 1, 2024 - Jupyter Notebook
Phylogenetic tree maker for alignment and phylogeny inference. Performs global and local sequence alignments using the Needleman-Wunsch and Smith-Waterman algorithms, followed by tree construction via the Neighbor-Joining method.
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May 26, 2024 - Python
Extracting forms character without messing up the sequence.
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Jun 30, 2019 - Python
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Jun 30, 2020 - Python
Local Sequence Alignment Tool for Probabilistic DNA databases
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Sep 25, 2020 - Python
CRAN R Packaged published 2021. Sequence Alignment with Non-Uniform Time Intervals: an algorithm for the comparison of two sequences in time.
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Mar 7, 2022 - R
A program that uses the Synteny Index algorithm to compare between Eukaryotes.
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Jan 3, 2023 - Perl
This is a Bayesian model for sequence and structure alignment of multiple proteins in a star phylogeny. The structural divergence across time is modelled by letting the dihedral angles of the backbones evolve according to a diffusion over the flat square torus.
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Jun 20, 2023 - Julia
Implementation of Needleman-Wunsch's algorithm for sequences alignment using BLOSUM62 matrix
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Apr 15, 2023 - Python
SecAlignVisualizer is a tool for visualizing multiple sequence alignments with secondary structure annotations. It parses PDB files to extract helix and sheet information, maps this information to sequence alignments, and generates an HTML representation with color-coded secondary structures.
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Jun 23, 2024 - Jupyter Notebook
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